Nonreversible Markov chain Monte Carlo algorithm for efficient generation of Self-Avoiding Walks
Hanqing Zhao, Marija Vucelja

TL;DR
This paper presents a new nonreversible Markov chain Monte Carlo algorithm that efficiently generates self-avoiding walks, outperforming previous methods especially in three dimensions, by allowing flexible elementary moves.
Contribution
The paper introduces a novel nonreversible MCMC algorithm for self-avoiding walks that improves efficiency and speed over existing algorithms, particularly in three-dimensional cases.
Findings
Slightly better performance in 2D compared to previous algorithms.
3-5 times faster in 3D than existing methods.
Allows three types of elementary moves: shorten, extend, or alter conformation.
Abstract
We introduce an efficient nonreversible Markov chain Monte Carlo algorithm to generate self-avoiding walks with a variable endpoint. In two dimensions, the new algorithm slightly outperforms the two-move nonreversible Berretti-Sokal algorithm introduced by H.~Hu, X.~Chen, and Y.~Deng in \cite{old}, while for three-dimensional walks, it is 3--5 times faster. The new algorithm introduces nonreversible Markov chains that obey global balance and allows for three types of elementary moves on the existing self-avoiding walk: shorten, extend or alter conformation without changing the walk's length.
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Taxonomy
TopicsAlgorithms and Data Compression · Graph Theory and Algorithms · Natural Language Processing Techniques
