Crystal structure prediction using age-fitness multi-objective genetic algorithm and coordination number constraints

TL;DR

This paper introduces a multi-objective genetic algorithm for crystal structure prediction that improves accuracy and avoids premature convergence by optimizing contact map match, individual age, and coordination number.

Contribution

It presents a novel multi-objective genetic algorithm that enhances contact map-based crystal structure prediction by incorporating age and coordination number constraints.

Findings

Higher quality crystal structure reconstruction

Reduced premature convergence in optimization process

Improved prediction accuracy over previous methods

Abstract

Crystal structure prediction (CSP) has emerged as one of the most important approaches for discovering new materials. CSP algorithms based on evolutionary algorithms and particle swarm optimization have discovered a great number of new materials. However, these algorithms based on ab initio calculation of free energy are inefficient. Moreover, they have severe limitations in terms of scalability. We recently proposed a promising crystal structure prediction method based on atomic contact maps, using global optimization algorithms to search for the Wyckoff positions by maximizing the match between the contact map of the predicted structure and the contact map of the true crystal structure. However, our previous contact map based CSP algorithms have two major limitations: (1) the loss of search capability due to getting trapped in local optima; (2) it only uses the connection of atoms in the unit cell to predict the crystal structure, ignoring the chemical environment outside the unit cell, which may lead to unreasonable coordination environments. Herein we propose a novel multi-objective genetic algorithms for contact map-based crystal structure prediction by optimizing three objectives, including contact map match accuracy, the individual age, and the coordination number match. Furthermore, we assign the age values to all the individuals of the GA and try to minimize the age aiming to avoid the premature convergence problem. Our experimental results show that compared to our previous CMCrystal algorithm, our multi-objective crystal structure prediction algorithm (CMCrystalMOO) can reconstruct the crystal structure with higher quality and alleviate the problem of premature convergence.