Stochastic Mutual Information Gradient Estimation for Dimensionality Reduction Networks

TL;DR

This paper introduces MMINet, a neural network that uses stochastic mutual information gradient estimation for end-to-end dimensionality reduction, aiming to maximize class-related information without distributional assumptions.

Contribution

It presents a novel neural network training method based on stochastic mutual information gradient estimation for feature transformation in supervised dimensionality reduction.

Findings

Effective on high-dimensional biological data

Outperforms traditional feature selection methods

No distributional assumptions needed

Abstract

Feature ranking and selection is a widely used approach in various applications of supervised dimensionality reduction in discriminative machine learning. Nevertheless there exists significant evidence on feature ranking and selection algorithms based on any criterion leading to potentially sub-optimal solutions for class separability. In that regard, we introduce emerging information theoretic feature transformation protocols as an end-to-end neural network training approach. We present a dimensionality reduction network (MMINet) training procedure based on the stochastic estimate of the mutual information gradient. The network projects high-dimensional features onto an output feature space where lower dimensional representations of features carry maximum mutual information with their associated class labels. Furthermore, we formulate the training objective to be estimated non-parametrically with no distributional assumptions. We experimentally evaluate our method with applications to high-dimensional biological data sets, and relate it to conventional feature selection algorithms to form a special case of our approach.