Topological Obstructions to Autoencoding
Joshua Batson, C. Grace Haaf, Yonatan Kahn, Daniel A. Roberts

TL;DR
This paper investigates how the intrinsic topology of data affects the effectiveness of autoencoders in anomaly detection, revealing limitations due to topological obstructions that can cause false positives or missed anomalies.
Contribution
It provides a topological analysis of autoencoders, demonstrating how data topology influences reconstruction errors and the autoencoder's ability to detect anomalies.
Findings
Topological features can cause autoencoders to misclassify anomalies.
Autoencoders may reconstruct rare or anomalous events with low error due to local interpolation biases.
Topology impacts the latent space representation during training, affecting anomaly detection performance.
Abstract
Autoencoders have been proposed as a powerful tool for model-independent anomaly detection in high-energy physics. The operating principle is that events which do not belong to the space of training data will be reconstructed poorly, thus flagging them as anomalies. We point out that in a variety of examples of interest, the connection between large reconstruction error and anomalies is not so clear. In particular, for data sets with nontrivial topology, there will always be points that erroneously seem anomalous due to global issues. Conversely, neural networks typically have an inductive bias or prior to locally interpolate such that undersampled or rare events may be reconstructed with small error, despite actually being the desired anomalies. Taken together, these facts are in tension with the simple picture of the autoencoder as an anomaly detector. Using a series of illustrative…
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