On the quantum mechanical potential of mean force. II. Constrained path integral molecular dynamics integrators
Dmitri Iouchtchenko, Kevin P. Bishop, Pierre-Nicholas Roy

TL;DR
This paper introduces two new path integral molecular dynamics integrators, c-OBABO and c-BAOAB, that incorporate holonomic constraints and enable efficient computation of the potential of mean force and its derivatives.
Contribution
The paper develops and compares two constrained PIMD integrators, demonstrating their effectiveness in calculating PMFs and derivatives, with c-BAOAB showing improved accuracy over c-OBABO.
Findings
c-BAOAB has smaller time step errors than c-OBABO.
Both integrators accurately compute the PMF of a water dimer.
Results agree with previous path integral umbrella sampling studies.
Abstract
Building on Paper I of this series, which introduced path integral Monte Carlo (PIMC) estimators for the derivative of the potential of mean force (PMF), we propose two path integral molecular dynamics (PIMD) integrators that can make use of these estimators. These integrators, c-OBABO and c-BAOAB, are based on the path integral Langevin equation (PILE) integrator, which has seen widespread success in PIMD applications, but they include support for holonomic constraints. When the reaction coordinate is the distance between two centers of mass, we find that several exact expressions are accessible: the Fixman correction, the position constraint Lagrange multiplier, and various derivatives with respect to the reaction coordinate. It is observed that c-BAOAB tends to have a smaller time step error than c-OBABO, which is consistent with previous studies on integrator step ordering in…
Peer Reviews
No public reviews on file for this paper yet. If you reviewed it on a platform where reviews are public (OpenReview, ICLR, NeurIPS, ICML), you can paste yours below so the community can read it here.
Videos
No videos yet. Explain this paper in a talk, walkthrough, or lecture? Add one.
Taxonomy
TopicsHemoglobin structure and function · Cold Atom Physics and Bose-Einstein Condensates · Quantum, superfluid, helium dynamics
