A Practical Approach towards Causality Mining in Clinical Text using Active Transfer Learning

TL;DR

This paper presents a practical, active transfer learning framework that effectively extracts causal relationships from clinical text, improving accuracy and recall, and can be adapted to other domains for healthcare insights.

Contribution

The work introduces a novel causality mining framework combining term expansion, phrase generation, BERT embeddings, and active transfer learning for clinical text analysis.

Findings

Performance improvements in accuracy and recall over multiple iterations

Effective extraction of causal relationships from clinical text

Framework demonstrates versatility and potential for other domains

Abstract

Objective: Causality mining is an active research area, which requires the application of state-of-the-art natural language processing techniques. In the healthcare domain, medical experts create clinical text to overcome the limitation of well-defined and schema driven information systems. The objective of this research work is to create a framework, which can convert clinical text into causal knowledge. Methods: A practical approach based on term expansion, phrase generation, BERT based phrase embedding and semantic matching, semantic enrichment, expert verification, and model evolution has been used to construct a comprehensive causality mining framework. This active transfer learning based framework along with its supplementary services, is able to extract and enrich, causal relationships and their corresponding entities from clinical text. Results: The multi-model transfer learning technique when applied over multiple iterations, gains performance improvements in terms of its accuracy and recall while keeping the precision constant. We also present a comparative analysis of the presented techniques with their common alternatives, which demonstrate the correctness of our approach and its ability to capture most causal relationships. Conclusion: The presented framework has provided cutting-edge results in the healthcare domain. However, the framework can be tweaked to provide causality detection in other domains, as well. Significance: The presented framework is generic enough to be utilized in any domain, healthcare services can gain massive benefits due to the voluminous and various nature of its data. This causal knowledge extraction framework can be used to summarize clinical text, create personas, discover medical knowledge, and provide evidence to clinical decision making.