Making mean-estimation more efficient using an MCMC trace variance approach: DynaMITE
Cyrus Cousins, Shahrzad Haddadan, Eli Upfal

TL;DR
DynaMITE is a new adaptive MCMC mean estimation method that minimizes dependence on difficult-to-estimate mixing times by using a novel inter-trace variance measure, improving efficiency especially when bounds are loose.
Contribution
We introduce the inter-trace variance measure and DynaMITE, a dynamic, variance-aware MCMC estimator that reduces reliance on tight mixing time bounds and stationary variance.
Findings
DynaMITE achieves near-optimal complexity without prior bounds on stationary variance.
It outperforms previous methods when the function's image distribution is symmetric.
The inter-trace variance is bounded by the stationary variance, enabling effective variance control.
Abstract
We introduce a novel statistical measure for MCMC-mean estimation, the inter-trace variance , which depends on a Markov chain and a function . The inter-trace variance can be efficiently estimated from observed data and leads to a more efficient MCMC-mean estimator. Prior MCMC mean-estimators receive, as input, upper-bounds on or , and often also the stationary variance, and their performance is highly dependent to the sharpness of these bounds. In contrast, we introduce DynaMITE, which dynamically adjusts the sample size, it is less sensitive to the looseness of input upper-bounds on , and requires no bound on . Receiving only an upper-bound on , DynaMITE estimates the mean of in $\tilde{\cal{O}}\bigl(\smash{\frac{{\cal T}_{rel}…
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Taxonomy
TopicsMarkov Chains and Monte Carlo Methods · Mass Spectrometry Techniques and Applications · Protein Structure and Dynamics
