AtrialJSQnet: A New Framework for Joint Segmentation and Quantification of Left Atrium and Scars Incorporating Spatial and Shape Information

TL;DR

AtrialJSQnet is an innovative end-to-end framework that jointly segments the left atrium and quantifies scars in LGE MRI, leveraging spatial and shape information to improve accuracy in clinical cardiac imaging.

Contribution

The paper introduces a novel joint segmentation and quantification framework with shape attention and spatial encoding, enhancing performance over existing methods.

Findings

Achieved competitive results on MICCAI2018 LA challenge dataset.

Explicitly modeled LA and scar relationship, improving task accuracy.

Reduced noisy segmentation patches with spatial encoding loss.

Abstract

Left atrial (LA) and atrial scar segmentation from late gadolinium enhanced magnetic resonance imaging (LGE MRI) is an important task in clinical practice. %, to guide ablation therapy and predict treatment results for atrial fibrillation (AF) patients. The automatic segmentation is however still challenging, due to the poor image quality, the various LA shapes, the thin wall, and the surrounding enhanced regions. Previous methods normally solved the two tasks independently and ignored the intrinsic spatial relationship between LA and scars. In this work, we develop a new framework, namely AtrialJSQnet, where LA segmentation, scar projection onto the LA surface, and scar quantification are performed simultaneously in an end-to-end style. We propose a mechanism of shape attention (SA) via an explicit surface projection, to utilize the inherent correlation between LA and LA scars. In specific, the SA scheme is embedded into a multi-task architecture to perform joint LA segmentation and scar quantification. Besides, a spatial encoding (SE) loss is introduced to incorporate continuous spatial information of the target, in order to reduce noisy patches in the predicted segmentation. We evaluated the proposed framework on 60 LGE MRIs from the MICCAI2018 LA challenge. Extensive experiments on a public dataset demonstrated the effect of the proposed AtrialJSQnet, which achieved competitive performance over the state-of-the-art. The relatedness between LA segmentation and scar quantification was explicitly explored and has shown significant performance improvements for both tasks. The code and results will be released publicly once the manuscript is accepted for publication via https://zmiclab.github.io/projects.html.