Quantifying uncertainty and dynamical changes in multi-species fishing mortality rates, catches and biomass by combining state-space and mechanistic multi-species models
Michael A. Spence, Robert B. Thorpe, Paul G. Blackwell, Finlay Scott,, Richard Southwell, Julia L. Blanchard

TL;DR
This paper introduces a state-space approach to fit mechanistic multi-species models to data, quantifying uncertainty and improving long-term predictions for marine fish stocks, addressing limitations of traditional single-species models.
Contribution
It demonstrates a novel method to directly fit complex multi-species models with quantifiable uncertainty, reducing reliance on assumptions and propagating errors from single-species models.
Findings
Successfully fitted multi-species model parameters to Celtic Sea data
Reduced error propagation from single-species to multi-species models
Enhanced model credibility and potential for management applications
Abstract
In marine management, fish stocks are often managed on a stock-by-stock basis using single-species models. Many of these models are based upon statistical techniques and are good at assessing the current state and making short-term predictions; however, as they do not model interactions between stocks, they lack predictive power on longer timescales. Additionally, there are mechanistic multi-species models that represent key biological processes and consider interactions between stocks such as predation and competition for resources. Due to the complexity of these models, they are difficult to fit to data, and so many mechanistic multi-species models depend upon single-species models where they exist, or ad hoc assumptions when they don't, for parameters such as annual fishing mortality. In this paper we demonstrate that by taking a state-space approach, many of the uncertain parameters…
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