Kaemika app, Integrating protocols and chemical simulation
Luca Cardelli
TL;DR
Kaemika is a versatile app that integrates chemical simulation, protocol execution, and graphical network representation, enabling comprehensive modeling of chemical and microfluidic experiments.
Contribution
It introduces a novel unambiguous graph representation and combines deterministic/stochastic simulation with protocol execution in a user-friendly app.
Findings
Supports natural chemical notation with recursive and conditional network generation
Interleaves chemical and microfluidic simulations for complete experimental modeling
Provides a new graphical layout for chemical reaction networks
Abstract
Kaemika is an app available on the four major app stores. It provides deterministic and stochastic simulation, supporting natural chemical notation enhanced with recursive and conditional generation of chemical reaction networks. It has a liquid-handling protocol sublanguage compiled to a virtual digital microfluidic device. Chemical and microfluidic simulations can be interleaved for full experimental-cycle modeling. A novel and unambiguous representation of directed multigraphs is used to lay out chemical reaction networks in graphical form.
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