PRISM: Patient Response Identifiers for Stratified Medicine

TL;DR

PRISM is a flexible statistical framework that uses machine learning to identify patient subgroups and predictors of drug response, aiding stratified medicine development with unbiased treatment effect estimates.

Contribution

It introduces a novel, adaptable framework for discovering response predictors and subgroups, integrating machine learning with clinical trial analysis.

Findings

Simulation studies demonstrate PRISM's effectiveness.

Application to real clinical trial data shows practical utility.

Framework enables unbiased subgroup treatment effect estimation.

Abstract

Pharmaceutical companies continue to seek innovative ways to explore whether a drug under development is likely to be suitable for all or only an identifiable stratum of patients in the target population. The sooner this can be done during the clinical development process, the better it is for the company, and downstream for prescribers, payers, and most importantly, for patients. To help enable this vision of stratified medicine, we describe a powerful statistical framework, Patient Response Identifiers for Stratified Medicine (PRISM), for the discovery of potential predictors of drug response and associated subgroups using machine learning tools. PRISM is highly flexible and can have many "configurations", allowing the incorporation of complementary models or tools for a variety of outcomes and settings. One promising PRISM configuration is to use the observed outcomes for subgroup identification, while using counterfactual within-patient predicted treatment differences for subgroup-specific treatment estimates and associated interpretation. This separates the "subgroup-identification" from the "decision-making" and, to facilitate clinical design planning, is a simple way to obtain unbiased treatment effect sizes in the discovered subgroups. Simulation results, along with data from a real clinical trial are used to illustrate the utility of the proposed PRISM framework.