A graphic formulation of non-isothermal chemical reaction systems and the analysis of detailed balanced networks
Zhou Fang, Arjan van der Schaft, and Chuanhou Gao

TL;DR
This paper introduces a graphic formulation for non-isothermal chemical reaction systems, demonstrating their convergence to equilibrium and revealing fundamental thermodynamic properties using a novel modeling approach.
Contribution
It extends classical reaction network models by incorporating thermal effects and provides a comprehensive analysis of stability and equilibrium properties.
Findings
Non-isothermal detailed balanced networks converge to a unique equilibrium.
The model captures thermodynamic effects via additional parameters.
Systems exhibit dissipativeness and asymptotic stability.
Abstract
In this paper, we provide a graphic formulation of non-isothermal reaction systems and show that a non-isothermal detailed balanced network system converges (locally) asymptotically to the unique equilibrium within the invariant manifold determined by the initial condition. To model thermal effects, the proposed modeling approach extends the classical chemical reaction network by adding two parameters to each direct (reaction) edge, depicting, respectively, the instantaneous internal energy change after the firing of the reaction and the variation of the reaction rate with respect to the temperature. For systems possessing thermodynamic equilibria, our modeling approach provides a compact formulation of the dynamics where reaction topology and thermodynamic information are presented simultaneously. Finally, using this formulation and the Legendre transformation, we show that…
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Taxonomy
TopicsAdvanced Thermodynamics and Statistical Mechanics · Gene Regulatory Network Analysis · Protein Structure and Dynamics
