DR$\vert$GRADUATE: uncertainty-aware deep learning-based diabetic retinopathy grading in eye fundus images

TL;DR

DR|GRADUATE is a deep learning system for diabetic retinopathy grading that provides interpretable explanations and uncertainty estimates, improving trustworthiness and potential clinical utility in ophthalmology.

Contribution

It introduces a novel Gaussian-sampling approach within a Multiple Instance Learning framework for uncertainty-aware DR grading using only image labels.

Findings

Achieved quadratic-weighted Cohen's kappa of 0.71 to 0.84 across datasets.

Uncertainty correlates with prediction accuracy and image quality.

Enables outlier detection and highlights diagnostic regions.

Abstract

Diabetic retinopathy (DR) grading is crucial in determining the adequate treatment and follow up of patients, but the screening process can be tiresome and prone to errors. Deep learning approaches have shown promising performance as computer-aided diagnosis(CAD) systems, but their black-box behaviour hinders the clinical application. We propose DR$\vert$GRADUATE, a novel deep learning-based DR grading CAD system that supports its decision by providing a medically interpretable explanation and an estimation of how uncertain that prediction is, allowing the ophthalmologist to measure how much that decision should be trusted. We designed DR$\vert$GRADUATE taking into account the ordinal nature of the DR grading problem. A novel Gaussian-sampling approach built upon a Multiple Instance Learning framework allow DR$\vert$GRADUATE to infer an image grade associated with an explanation map and a prediction uncertainty while being trained only with image-wise labels. DR$\vert$GRADUATE was trained on the Kaggle training set and evaluated across multiple datasets. In DR grading, a quadratic-weighted Cohen's kappa (QWK) between 0.71 and 0.84 was achieved in five different datasets. We show that high QWK values occur for images with low prediction uncertainty, thus indicating that this uncertainty is a valid measure of the predictions' quality. Further, bad quality images are generally associated with higher uncertainties, showing that images not suitable for diagnosis indeed lead to less trustworthy predictions. Additionally, tests on unfamiliar medical image data types suggest that DR$\vert$GRADUATE allows outlier detection. The attention maps generally highlight regions of interest for diagnosis. These results show the great potential of DR$\vert$GRADUATE as a second-opinion system in DR severity grading.