Molecular and DNA Artificial Neural Networks via Fractional Coding

TL;DR

This paper introduces molecular neural networks using DNA and fractional coding, enabling computation of sigmoid functions with arbitrary weights, and demonstrates their application in seizure prediction.

Contribution

It presents novel molecular perceptrons capable of handling arbitrary weights and computing sigmoid functions, advancing molecular neural network capabilities.

Findings

Molecular perceptrons handle arbitrary weights and compute sigmoid of weighted sums.

A molecular neural network with one hidden layer is constructed using fractional coding.

Application to seizure prediction demonstrates practical molecular neural network implementation.

Abstract

This paper considers implementation of artificial neural networks (ANNs) using molecular computing and DNA based on fractional coding. Prior work had addressed molecular two-layer ANNs with binary inputs and arbitrary weights. In prior work using fractional coding, a simple molecular perceptron that computes sigmoid of scaled weighted sum of the inputs was presented where the inputs and the weights lie between [-1, 1]. Even for computing the perceptron, the prior approach suffers from two major limitations. First, it cannot compute the sigmoid of the weighted sum, but only the sigmoid of the scaled weighted sum. Second, many machine learning applications require the coefficients to be arbitrarily positive and negative numbers that are not bounded between [-1, 1]; such numbers cannot be handled by the prior perceptron using fractional coding. This paper makes four contributions. First molecular perceptrons that can handle arbitrary weights and can compute sigmoid of the weighted sums are presented. Thus, these molecular perceptrons are ideal for regression applications and multi-layer ANNs. A new molecular divider is introduced and is used to compute sigmoid(ax) where a > 1. Second, based on fractional coding, a molecular artificial neural network (ANN) with one hidden layer is presented. Third, a trained ANN classifier with one hidden layer from seizure prediction application from electroencephalogram is mapped to molecular reactions and DNA and their performances are presented. Fourth, molecular activation functions for rectified linear unit (ReLU) and softmax are also presented.