Fitting IVIM with Variable Projection and Simplicial Optimization
Shreyas Fadnavis, Hamza Farooq, Maryam Afzali, Christoph Lenglet,, Tryphon Georgiou, Hu Cheng, Sharlene Newman, Shahnawaz Ahmed, Rafael Neto, Henriques, Eric Peterson, Serge Koudoro, Ariel Rokem, Eleftherios, Garyfallidis

TL;DR
This paper introduces a new robust framework for fitting the IVIM model in diffusion MRI, improving parameter estimation accuracy and automation through advanced optimization techniques, and providing open-source tools for the community.
Contribution
The work presents a novel fitting framework for IVIM that integrates variable projection and simplicial optimization, enhancing robustness and automation over previous methods.
Findings
Improved parameter disentanglement in IVIM fitting.
Enhanced robustness with advanced global optimization methods.
Open-source implementation available for community use.
Abstract
Fitting multi-exponential models to Diffusion MRI (dMRI) data has always been challenging due to various underlying complexities. In this work, we introduce a novel and robust fitting framework for the standard two-compartment IVIM microstructural model. This framework provides a significant improvement over the existing methods and helps estimate the associated diffusion and perfusion parameters of IVIM in an automatic manner. As a part of this work we provide capabilities to switch between more advanced global optimization methods such as simplicial homology (SH) and differential evolution (DE). Our experiments show that the results obtained from this simultaneous fitting procedure disentangle the model parameters in a reduced subspace. The proposed framework extends the seminal work originated in the MIX framework, with improved procedures for multi-stage fitting. This framework has…
Peer Reviews
No public reviews on file for this paper yet. If you reviewed it on a platform where reviews are public (OpenReview, ICLR, NeurIPS, ICML), you can paste yours below so the community can read it here.
Videos
No videos yet. Explain this paper in a talk, walkthrough, or lecture? Add one.
Taxonomy
TopicsAdvanced Neuroimaging Techniques and Applications · Topological and Geometric Data Analysis · Advanced Numerical Analysis Techniques
