Repeat-Free Codes
Ohad Elishco, Ryan Gabrys, Eitan Yaakobi, Muriel M\'edard

TL;DR
This paper investigates the capacity of repeat-free sequences, develops efficient encoding algorithms with minimal redundancy, and extends the analysis to sequences with local constraints and multi-dimensional cases.
Contribution
It introduces new algorithms for encoding repeat-free sequences with low redundancy and calculates their capacities under various constraints.
Findings
Capacity of repeat-free sequences is calculated.
Efficient encoding algorithms with two bits of redundancy are proposed.
Capacities are extended to sequences with local constraints and multi-dimensional cases.
Abstract
In this paper we consider the problem of encoding data into \textit{repeat-free} sequences in which sequences are imposed to contain any -tuple at most once (for predefined ). First, the capacity of the repeat-free constraint are calculated. Then, an efficient algorithm, which uses two bits of redundancy, is presented to encode length- sequences for . This algorithm is then improved to support any value of of the form , for , while its redundancy is . We also calculate the capacity of repeat-free sequences when combined with local constraints which are given by a constrained system, and the capacity of multi-dimensional repeat-free codes.
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Taxonomy
TopicsAdvanced Data Storage Technologies · Error Correcting Code Techniques · DNA and Biological Computing
