# AtomREM: Non-empirical seeker of the minimum energy escape paths on   many-dimensional potential landscapes without coarse graining

**Authors:** Yuri S. Nagornov, Ryosuke Akashi

arXiv: 1907.13316 · 2020-06-18

## TL;DR

AtomREM is an open-source, MPI-parallelized software tool that non-empirically finds minimum energy escape paths in high-dimensional potential landscapes, integrating with LAMMPS for diverse atomic systems.

## Contribution

It introduces AtomREM, a novel parallelized solver implementing a non-empirical method for locating minimum energy paths without coarse graining.

## Key findings

- Successfully applied to molecular systems
- Effectively finds minimum energy escape paths
- Open-source and compatible with LAMMPS

## Abstract

Recently a non-empirical stochastic walker algorithm has been developed to search for the minimum-energy escape paths (MEP) from the minima of the potential surface [J. Phys. Soc. Jpn. 87, 063801 (2018); Physica A, 528, 121481 (2019)]. This method is based on the Master equation for the distribution function of the atomic configuration which has a nature to seek the MEP up along the valley of the potential surface. This paper introduces AtomREM (Atomistic Rare Event Manager), which is an MPI parallelized solver program package for executing this method, which yields minimum energy reaction pathways in terms of the microscopic evolution of atomic positions. It is open-source and released under the GNU General Public License (GPL). AtomREM interfaces with the LAMMPS Molecular Dynamics Simulator as a library of versatile potential functions for application to various systems. Examples of the applications to molecular and solid systems are presented.

## Full text

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## Figures

15 figures with captions in the complete paper: https://tomesphere.com/paper/1907.13316/full.md

## References

37 references — full list in the complete paper: https://tomesphere.com/paper/1907.13316/full.md

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Source: https://tomesphere.com/paper/1907.13316