Factors influencing thermal solidification of bent-core trimers
Elvin D. Salcedo, Hong T. Nguyen, Robert S. Hoy

TL;DR
This study uses molecular dynamics simulations to explore how the bond angle in bent-core trimers influences their thermal solidification, revealing key factors that determine crystallization versus glass formation.
Contribution
It provides new insights into how bond angle variations affect solidification behavior and crystallization pathways in bent-core trimers, linking structural tendencies to thermodynamic and kinetic factors.
Findings
Solidification temperature increases as trimers straighten.
Certain bond angles favor FCC and HCP crystallization, others lead to glass formation.
Local cluster structures above solidification temperature predict crystallization or glass formation.
Abstract
Bent-core trimers are a simple model system for which the competition between crystallization and glass-formation can be tuned by varying a single parameter:\ the bond angle . Using molecular dynamics simulations, we examine how varying affects their thermal solidification. By examining trends with , comparing these to trends in trimers' jamming phenomenology, and then focusing on the six that are commensurable with close-packed crystalline order, we obtain three key results: \textbf{(i)} the increase in trimers' solidification temperature as they straighten (as ) is driven by the same gradual loss of \textit{effective} configurational freedom that drives athermal trimers' decreasing ; \textbf{(ii)} that allow formation of both FCC and HCP order crystallize, while that…
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Factors influencing thermal solidification of bent-core trimers
Elvin D. Salcedo1
Hong T. Nguyen2
Robert S. Hoy1
1Department of Physics, University of South Florida, Tampa, FL 33620
2Department of Materials Science and Engineering, University of Texas at Dallas, Richardson, Texas 75080
Abstract
Bent-core trimers are a simple model system for which the competition between crystallization and glass-formation can be tuned by varying a single parameter: the bond angle . Using molecular dynamics simulations, we examine how varying affects their thermal solidification. By examining trends with , comparing these to trends in trimers’ jamming phenomenology, and then focusing on the six that are commensurable with close-packed crystalline order, we obtain three key results: (i) the increase in trimers’ solidification temperature as they straighten (as ) is driven by the same gradual loss of effective configurational freedom that drives athermal trimers’ decreasing ; (ii) that allow formation of both FCC and HCP order crystallize, while that only allow formation of HCP order glass-form; (iii) local cluster-level structure at temperatures slightly above is highly predictive of whether trimers will crystallize or glass-form.
I Introduction
Bent-core trimers are a simple model for many small organic molecules whose bulk liquids exhibit both crystallization and glass-formation in experiments Andrews and Ubbelohde (1955); C. Alba and Angell (1990); Powell et al. (2014); Ping et al. (2011). Their shape can be characterized using three parameters (Fig. 1): the bond angle , the ratio of end-monomer radius to center-monomer radius, and the ratio of intermonomer bond length to center-monomer diameter. It is well known that the properties of systems composed of such molecules depend strongly on all three of these parameters. For example, the three terphenyl isomers, which can be modeled as trimers with the same and but different , form very differently structured bulk solids under the same preparation protocol Andrews and Ubbelohde (1955). Analogous -dependent differences occur between the three xylene isomers C. Alba and Angell (1990). Two more classes of small molecules, the diphenylcycloalkenes and cyclic stilbenes, which can each be modeled as having the same but different and , show similarly complex and poorly-understood dependence of crystallizability on molecular shape Powell et al. (2014); Ping et al. (2011).
One of the reasons why our understanding of such phenomena and hence our ability to engineer crystallizability/glass-formability at the molecular level remains very limited is that only a few theoretical studies have isolated the role played by molecular shape using simple models. Ref. Jennings et al. (2015) reported the densest packings of 2D trimers as a function of and . Refs. Pedersen et al. (2011); Pedersen and Harrowell (2011); ped examined the thermal solidification of Lewis-Wahnstrom-like models ( Lewis and Wahnstrom (1994)) and reported several nontrivial effects of trimeric structure, e.g. that its enhancement of the interfacial energy between crystalline and liquid phases promotes glass-formation. The tangent-sphere () case shown in Fig. 1(b) is of considerable interest because it allows straightforward connection to results obtained for monomers – and hence isolation of the role played by the bond and angular constraints – while remaining a reasonable minimal model for trimeric molecules. Refs. Griffith and Hoy (2018); gri reported the densest packings of 2D and 3D tangent-sphere trimers and contrasted them to the jammed packings they form under dynamic athermal compression.
In this paper, we examine the thermal solidification of bent-core tangent-sphere trimers as a function of their bond angle using molecular dynamics simulations. We obtain three key results: (i) the sharply increasing solidification temperature for is driven by the same gradual loss of effective configurational freedom that drives athermal trimers’ decreasing gri ; (ii) that allow formation of both FCC and HCP order crystallize, while that only allow formation of HCP order glass-form; (iii) measurements of local cluster-level structure via CCE and TCC analyses Karayiannis et al. (2009); Malins et al. (2013a) are as predictive of whether trimers will crystallize or glass-form as they are for monomeric systems.
II Model and Methods
II.1 Molecular dynamics simulations
Each simulated trimer contains three monomers of mass . These trimers are rigid; their bond lengths and angles are held fixed by holonomic constraints. Monomers belonging to different trimers interact via the truncated and shifted Lennard-Jones potential
[TABLE]
where is the energy scale of the pair interactions, is monomer diameter, and is the cutoff radius.
The Lewis-Wahnstrom model Lewis and Wahnstrom (1994) is a good glass-former largely because its equilibrium backbone bond length is incommensurable with its equilibrium nearest neighbor distance for nonbonded neighbors ; specifically, it has and . In contrast, the current model makes these lengths commensurable (). Any frustration against crystallization is driven primarily by the bond angle oth . Six are commensurable with 3D close-packing: gri . All of these allow formation of HCP crystals, whereas only allow formation of FCC crystals. We will argue below that this distinction is critical.
Initial states are generated by placing trimers randomly within a cubic cell at a packing fraction . Periodic boundary conditions are applied along all three directions and Newton’s equations of motion are integrated with a timestep , where the unit of time is . Systems are equilibrated at until intertrimer structure has converged, then slowly cooled to [at a rate ], all at zero pressure. Fixed covalent bond lengths and bond angles are maintained using a standard method Kamberaj et al. (2005). All MD simulations are performed using LAMMPS Plimpton (1995).
We identify the solidification temperature of each system using one of two methods. For systems exhibiting crystallization, we simply locate the center of the first-order-like jump in as decreases. For systems exhibiting glass-formation, we identify as the intersection points of linear fits to the high- and low- portions of their curves. Consistent with our focus on trimers’ solidification under dynamic cooling, these are below the equilibrium solid-liquid transition temperatures : , where increases with and with glass-formability. The employed here is low enough that is very small for our best crystal-formers.
II.2 Measures of local order
We characterize systems’ local structure using the characteristic crystallographic element (CCE) Karayiannis et al. (2009) and topological cluster classification (TCC) Malins et al. (2013a) methods. Recent studies employing CCE Karayiannis et al. (2011, 2012, 2013) or TCC Taffs et al. (2010, 2013); Malins et al. (2013b, c); Royall and Williams (2015) analyses have led to much progress in our understanding of thermal solidification. These studies have found that the presence of energetically stable amorphous clusters in a system’s liquid state (at temperatures slightly above its ) strongly promotes glass-formation. Long-lived clusters that are fivefold-symmetric and/or are subsets of icosahedra are particularly effective glass-promoters Karayiannis et al. (2011, 2012); Malins et al. (2013b, c).
CCE employs descriptors known as “norms” that quantify the orientational and radial similarities of a given monomer’s local environment to that of various reference structures such as HCP and FCC crystals Karayiannis et al. (2009). These norms are built around sets of point symmetry groups that uniquely characterize the reference structure. Criteria based on these norms are applied to determine whether the monomer can be associated with structure X. Here we identify monomers as FCC-like, HCP-like, or fivefold-like if their respective norms (where ) are less than . Monomers that satisfy none of these conditions are classified as “other”; these typically possess locally amorphous order. The relevant mathematical formulae and the algorithmic implementation are described in Ref. Karayiannis et al. (2009).
TCC is similar in spirit to CCE, but identifies differently structured clusters by their differing bond topology. Here we employ TCC to track how the populations of various microstructural motifs within our systems vary with and , using the same procedures detailed in Ref. Malins et al. (2013a). We focus on the four cluster types shown in Figure 2. is the octahedron, a common motif in close-packed crystals. , a polytetrahedral structure, has higher energy but also much higher entropy than Meng et al. (2010), and is a common motif in glassy and jammed systems Anikeenko and Medvedev (2007). is a partial icosahedron; recall that icosahedral order has long been known to promote glass-formation Frank (1952). Finally, is a subset of the HCP lattice.
During the cooling runs, we monitor the fractions of particles identified as X-like (for CCE analyses) or belonging to at least one cluster of type X (for TCC analyses). We will show below that -dependent differences in how these quantities evolve with decreasing predict whether a given system will crystallize or glass-form.
III Results
III.1 Macroscopic
Figure 3 summarizes the most basic features of bent-core trimers’ response to slow thermal cooling. Panel (a) shows the packing fraction – where is the monomer number density – for the six values of that are commensurable with 3D close-packing, and contrasts these to results for monomers. Three features are immediately apparent. First, some produce sharp, first-order-like jumps in that indicate rapid crystallization, while others produce typical glassy behavior where a smooth crossover regime centered at connects roughly linear behavior at high and low . It is noteworthy that some that are commensurable with formation of close-packed crystals glass-form even at the low cooling rate () employed here. Second, even for those systems that do crystallize, the sharpness of the transition depends strongly on ; systems with sharper transitions (e.g. ) have faster crystallization kinetics. Third, trimers always solidify at higher temperatures and lower densities than their monomeric counterparts foo .
As shown in panel (b), trimers’ solidification temperatures remain relatively constant as decreases from to , then increase rapidly as . This trend presumably results from the loss of effective configurational freedom as trimers approach linearity. Specifically, the middle monomer in a bent trimer can relax away from obstacles by rotating about the line connecting the end monomers even if the end monomers are held fixed, whereas the middle monomer in a straight trimer cannot. The same decrease in in effective configurational freedom appears to drive the decreasing in athermal bent-core trimers as gri , and analogous phenomena appear to decrease and increase in model polymeric systems Hoy (2017); Plaza-Rivera et al. (2017).
Panel (c) shows the packing fractions for all at three representative temperatures: , , and . The final densities reached at do not depend very strongly on ; the densest system () is only more tightly packed than the least-dense system (). The broad minimum around is consistent with – and, to some extent lwc , supports – Lewis-Wahnström-like models’ choice of as a bond angle suitable for modeling glassforming trimer-like molecules such as OTP Lewis and Wahnstrom (1994); Pedersen et al. (2011); Pedersen and Harrowell (2011); ped . Similar trends with are apparent at ; the -dependence of is fairly weak. In contrast, the much stronger -dependence of reflects the trends shown in panel (b), i.e. small- trimers crystallize from much-lower-density supercooled liquids than their large- counterparts.
III.2 Microscopic
The wide range of thermal solidification behavior highlighted in Fig. 3 results entirely from changing the bond angle , i.e. from changing trimers’ shape. This suggests that it can be understood at a microscopic level by applying tools and concepts like those applied to model atomic/colloidal systems in Refs. Karayiannis et al. (2011, 2012, 2013); Taffs et al. (2010, 2013); Malins et al. (2013b, c); Royall and Williams (2015).
Figure 4 shows snapshots of and systems at , with monomers color-coded by their CCE norms. The systems appear similar at ; while a few fivefold-symmetric sites are present, most lack any distinguishable order. For the systems, the only obvious changes as decreases are that more fivefold-symmetric sites appear, as do a very small number of HCP-ordered sites. The behavior of trimers is very different. A large degree of mixed FCC/HCP order is present by , and a relatively well-ordered crystal develops as decreases further; the snapshot clearly shows crystalline grains separated by stacking faults and amorphous interphase. Since these two respectively have the lowest and highest fraction of close-packed monomers at , we characterize them as the best glass-former and best crystal-former.
We now examine these differences more quantitatively. Figure 5 shows for these systems. Panel (a) illustrates how the crystal-former shows sharp (and typical Karayiannis et al. (2011, 2012)) upward jumps in both and and sharp downward jumps in and at , whereas the glass-former shows no such jumps. Intriguingly, is about an order of magnitude higher in the crystal-former at temperatures slightly above than it is in the glass-former, presumably indicating the crystal-forming liquid’s greater population of subcritical nuclei. Results from TCC analyses [panel (b)] show analogous trends; the crystal-former shows sharp (and typical Taffs et al. (2013); Royall and Williams (2015)) upward jumps in both and and sharp downward jumps in and at , whereas the glass-former does not. Remarkably, the formation propensity of midsize crystalline clusters, e.g. 9K [midsize amorphous clusters, e.g. 9B] is is significantly higher [lower] in the crystal-former even at .
These differences are consistent with trends seen in many model colloidal systems Karayiannis et al. (2011, 2012, 2013); Royall and Williams (2015); Taffs et al. (2010, 2013); Malins et al. (2013b, c). Considered in isolation, they are not surprising. What is surprising is that they are so stark despite the fact that both and trimers can form 3D close-packed crystals gri . We now attempt to understand them further by comparing CCE and TCC results for all .
Figure 6 shows the -dependence of for . Panel (a) summarizes the essential features of the bond angle’s effect on crystallizability. exhibits four broad maxima centered at . These four all allow formation of both FCC and HCP crystals. trimers all have . trimers crystallize far less well: their . A potential explanation for this difference is suggested by the fact that trimers can tile the 2D triangular lattice, whereas trimers cannot. Specifically, if crystal nuclei preferentially grow by trimers attaching to their triangular () lattice planes, their growth kinetics will be necessarily be slower for than for .
Panel (a) also illustrates a second key difference between crystal-forming and glass-forming systems. Most crystal-formers exhibit comparable and for . This is not surprising; formation of RHCP-crystalline order is typical for pair interactions ranging from Lennard-Jones to hard-spherical Torquato (2018). What is surprising is that formation of FCC (but not HCP) order is strongly suppressed in all glass-forming systems. The reason for this suppression is clear for – these trimers can tile the HCP but not the FCC lattice – and the full dataset suggests that this suppression of FCC relative to HCP ordering extends to well away from these special values. This is a nontrivial result because trimers with any () can form close-packed bilayers (trilayers) gri .
The -dependence of the TCC cluster populations at these three characteristic temperatures reinforces the above observations. Panel (b) shows three clear maxima [minima] of [] at . These match the trends in shown in panel (a) – sensibly so, because small crystalline clusters like 6A support close-packing while small amorphous clusters like 6Z suppress it Royall and Williams (2015); Taffs et al. (2010, 2013); Malins et al. (2013b, c). The higher- results for and are less conclusive; crystal formers show greater increases in as approaches from above, but trends in are not notably different for crystal- vs. glass-formers.
Clearer predictive distinctions emerge at the nine-particle level [panel (c)]. For , glass-formers have notably higher at , and the largest for occur in systems. Although partial-icosahedral structures like are well-known to suppress crystallization in atomic/colloidal systems Frank (1952); Royall and Williams (2015); Taffs et al. (2010, 2013); Malins et al. (2013b, c), few previous studies of molecular liquids have explored how these structures’ formation propensity varies with the constituent molecules’ shape, and this result would have been difficult to predict at the single-trimer level, especially since trimers can close-pack. Trends in crystalline-cluster populations (e.g. 9K) are less clear, apart from their notably lower for , which is is consistent with these systems higher and lower (Fig. 3).
Thus far our cluster-level analyses have treated all monomers equally and ignored dynamics. This approach is incomplete because we are considering molecular (i.e. trimeric) liquids, and because cluster-level dynamics are critical in determining glass-formability Malins et al. (2013b, c). Figure 7 illustrates the additional insights that can be gained at the six-particle level. In panel (a), is the fraction of trimers that lie entirely within a cluster of type X. Differences between the best crystal-former and best glass-former are far more dramatic than those illustrated in Fig. 5(b). Although many monomers in the liquid lie within 6A clusters, very few trimers do. In the liquid, however, many trimers lie within 6A clusters even at . Thermal diffusive motion of these trimers should make the 6A cluster lifetime much shorter in the liquid than it is in the liquid. Panel (b) confirms this hypothesis: is the probability that a given cluster of type that is present at is still present when the temperature has dropped to . The data show that 6A (6Z) clusters are far more stable in () liquids in this temperature range. Note that these dramatic differences in cluster stability are present despite the fact that the two systems’ are almost identical. While one might argue that they should have been expected because is very close to the ideal fivefold-symmetry-promoting bond angle (), we emphasize that they occur despite the fact that trimers can close-pack gri .
IV DIscussion and Conclusions
We examined how thermal solidification of bent-core trimers is influenced by their bond angle . Their solidification temperature is relatively constant for , but increases rapidly with decreasing owing to the reduction in trimers’ effective configurational freedom as they straighten. This decreasing freedom also produces a sharp decrease in athermal bent-core trimers’ as gri . We therefore conclude that these systems’ thermal-solidification (not just glass-formation) and jamming transitions are intimately connected, in a manner consistent with the ideas of Liu and Nagel Liu and Nagel (1998). Similar connections have recently been demonstrated for polymers Hoy (2017); Plaza-Rivera et al. (2017).
On the other hand, our results also illustrate a fascinating contrast between thermal and athermal solidification. In athermal 3D systems, the competition between FCC and HCP ordering suppresses crystallization because it produces random-close-packed amorphous order Lubachevsky et al. (1991); Torquato et al. (2000). In thermal trimer solidification, however, it seems that the absence of this competition suppresses crystallization. It is reasonable to suppose that HCP crystallites have a higher nucleation barrier () than those of mixed FCC/HCP order owing to their lower entropy. A higher for trimers that can form only HCP crystals would make them less likely to crystallize (under cooling at a fixed rate ) than trimers that can form both FCC and HCP order. This is indeed what we observe, and is consistent both with Pedersen et. al.’s finding that Lewis-Wahnstrom-like trimers glass-form more readily than monomeric Lennard-Jones systems primarily because their crystal nucleation barrier is higher Pedersen et al. (2011); Pedersen and Harrowell (2011); ped and with Russo and Tanaka’s conclusion that is the key quantity controlling glass-formability Russo et al. (2018).
We found that bent-core trimers exhibit a wide range of solidification behaviors; some are very good crystal-formers while others are very good glass-formers. By examining all six of the that are commensurable with 3D close-packing, we showed that these differences do not arise from geometric frustration. Instead, our CCE and TCC analyses showed that they arise from -dependent differences in trimer liquids’ tendencies to form local cluster-level structure that is stable and inhibits crystallization. Factors promoting greater stability of 6Z and other amorphous clusters (6A and other ordered clusters) unambiguously promote glass-formation (crystallization). The difference between the present study and previous studies with comparable findings Karayiannis et al. (2011, 2012, 2013); Royall and Williams (2015); Taffs et al. (2010, 2013); Malins et al. (2013b, c) is that in trimer liquids the relative strength of these factors is determined by the quenched 2- and 3-body constraints (i.e. by and ) rather than by details of the pairwise interactions or preparation protocol.
One of the principal goals of soft materials science is developing materials with tunable solid morphology. This can be done either by trial-and-error or by developing theories that predict the optimal molecular structure for obtaining a desired morphology and then synthesizing molecules possessing this structure. The latter approach, now commonly known as “molecular engineering”, has attracted great interest in recent years and has been applied to systems ranging from photonic crystals Lustig et al. to hydrogels Jungst et al. (2015). The results presented in this paper should be a useful contribution to this effort because controlling bond angles in isomeric and near-isomeric small molecules is a molecular-engineering strategy that is often employed by experimentalists Ping et al. (2011); Powell et al. (2014); et. al. (2017); Teerakapibal et al. (2018).
This material is based upon work supported by the National Science Foundation under Grant DMR-1555242. We thank Austin D. Griffith for helpful discussions.
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