# Pulling a DNA molecule through a nanopore embedded in an anionic   membrane: tension propagation coupled to electrostatics

**Authors:** Jalal Sarabadani, Sahin Buyukdagli, Tapio Ala-Nissila

arXiv: 1907.06976 · 2020-07-07

## TL;DR

This paper extends the tension propagation theory to include electrostatics, revealing that electrostatic energy release can accelerate DNA translocation through nanopores, especially at low salt and high membrane charge.

## Contribution

It introduces an electrostatic extension to the IFTP theory, showing how electrostatics can unexpectedly speed up polymer translocation.

## Key findings

- Electrostatics can accelerate translocation at low salt conditions.
- Translocation exponent exceeds 2 for long polymers with electrostatics.
- Electrostatic energy release acts as an effective attractive force.

## Abstract

We consider the influence of electrostatic forces on driven translocation dynamics of a flexible polyelectrolyte being pulled through a nanopore by an external force on the head monomer. To this end, we augment the iso-flux tension propagation (IFTP) theory with electrostatics for a negatively charged biopolymer pulled through a nanopore embedded in a similarly charged anionic membrane. We show that for the realistic case such as a single-stranded DNA, the translocation dynamics at low salt where screening is weak and at finite negative membrane charge is unexpectedly accelerated despite the large repulsive electrostatic interactions between the polymer coil on the {\it cis} side and the charged membrane. This is due to the rapid release of the electrostatic potential energy of the coil during translocation, leading to an effectively attractive force that assists end-driven translocation. The speedup results in non-monotonic polymer length and membrane charge dependence of the exponent $\alpha$ characterizing the translocation time $\tau \propto N_0^\alpha$ of the polymer with length $N_0$. In the regime of long polymers $N_0\gtrsim500$, the translocation exponent exceeds its upper limit $\alpha=2$ previously observed for the same system without electrostatic interactions.

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/1907.06976/full.md

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/1907.06976/full.md

## References

52 references — full list in the complete paper: https://tomesphere.com/paper/1907.06976/full.md

---
Source: https://tomesphere.com/paper/1907.06976