Early Recognition of Sepsis with Gaussian Process Temporal Convolutional Networks and Dynamic Time Warping

TL;DR

This paper introduces two novel machine learning approaches, a deep learning model and a lazy learner, for early sepsis detection using high-resolution ICU data, significantly improving early prediction accuracy.

Contribution

It presents the first fully accessible early sepsis detection environment and compares a Gaussian Process-based deep learning model with a dynamic time warping approach.

Findings

Seven hours before sepsis onset, AUPRC improved from 0.25 to 0.35/0.40

Deep learning model effectively handles irregular time series data

Methods outperform state-of-the-art in early sepsis detection

Abstract

Sepsis is a life-threatening host response to infection associated with high mortality, morbidity, and health costs. Its management is highly time-sensitive since each hour of delayed treatment increases mortality due to irreversible organ damage. Meanwhile, despite decades of clinical research, robust biomarkers for sepsis are missing. Therefore, detecting sepsis early by utilizing the affluence of high-resolution intensive care records has become a challenging machine learning problem. Recent advances in deep learning and data mining promise to deliver a powerful set of tools to efficiently address this task. This empirical study proposes two novel approaches for the early detection of sepsis: a deep learning model and a lazy learner based on time series distances. Our deep learning model employs a temporal convolutional network that is embedded in a Multi-task Gaussian Process Adapter framework, making it directly applicable to irregularly-spaced time series data. Our lazy learner, by contrast, is an ensemble approach that employs dynamic time warping. We frame the timely detection of sepsis as a supervised time series classification task. For this, we derive the most recent sepsis definition in an hourly resolution to provide the first fully accessible early sepsis detection environment. Seven hours before sepsis onset, our methods improve area under the precision--recall curve from 0.25 to 0.35/0.40 over the state of the art. This demonstrates that they are well-suited for detecting sepsis in the crucial earlier stages when management is most effective.