Minimum description length as an objective function for non-negative matrix factorization
Steven Squires, Adam Prugel Bennett, Mahesan Niranjan

TL;DR
This paper introduces MDL-NMF, a novel objective function for non-negative matrix factorization that balances model complexity and accuracy automatically using the minimum description length principle, reducing the need for parameter tuning.
Contribution
The paper proposes MDL-NMF, a new formulation for NMF that inherently manages sparsity and complexity without ad-hoc constraints or extensive parameter tuning.
Findings
Effective on three diverse real-world datasets
Performs well across various semi-synthetic data scenarios
Automatically balances model complexity and accuracy
Abstract
Non-negative matrix factorization (NMF) is a dimensionality reduction technique which tends to produce a sparse representation of data. Commonly, the error between the actual and recreated matrices is used as an objective function, but this method may not produce the type of representation we desire as it allows for the complexity of the model to grow, constrained only by the size of the subspace and the non-negativity requirement. If additional constraints, such as sparsity, are imposed the question of parameter selection becomes critical. Instead of adding sparsity constraints in an ad-hoc manner we propose a novel objective function created by using the principle of minimum description length (MDL). Our formulation, MDL-NMF, automatically trades off between the complexity and accuracy of the model using a principled approach with little parameter selection or the need for domain…
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Taxonomy
TopicsGene expression and cancer classification · Genomics and Chromatin Dynamics · Sparse and Compressive Sensing Techniques
