New Born-Oppenheimer molecular dynamics based on the extended Hueckel method: first results and future developments

TL;DR

This paper introduces a new quantum mechanical molecular dynamics method based on an extended Hueckel approach, demonstrating initial results and outlining future developments for studying large, complex systems efficiently.

Contribution

It presents a novel fast pseudo-diagonalization technique for extended Hueckel-based molecular dynamics, enabling simulations of larger systems with reduced computational costs.

Findings

Successful MD simulations of alanine decamer in gas phase

Development of a fast pseudo-diagonalization algorithm

Extended Hueckel method with electrostatic correction

Abstract

Computational chemistry at the atomic level has largely branched into two major fields, one based on quantum mechanics and the other on molecular mechanics using classical force fields. Because of high computational costs, quantum mechanical methods have been typically relegated to the study of small systems. Classical force field methods can describe systems with millions of atoms, but suffer from well known problems. For example, these methods have problems describing the rich coordination chemistry of transition metals or physical phenomena such as charge transfer. The requirement of specific parametrization also limits their applicability. There is clearly a need to develop new computational methods based on quantum mechanics to study large and heterogeneous systems. Quantum based methods are typically limited by the calculation of two-electron integrals and diagonalization of large matrices. Our initial work focused on the development of fast techniques for the calculation of two-electron integrals. In this publication the diagonalization problem is addressed and results from molecular dynamics simulations of alanine decamer in gas-phase using a new fast pseudo-diagonalization method are presented. The Hamiltonian is based on the standard Extended Hueckel approach, supplemented with a term to correct electrostatic interactions. Besides presenting results from the new algorithm, this publication also lays the requirements for a new quantum mechanical method and introduces the extended Hueckel method as a viable base to be developed in the future.