Bond Graph Representation of Chemical Reaction Networks
Peter J. Gawthrop, Edmund J. Crampin
TL;DR
This paper integrates bond graph modeling with chemical reaction networks to provide a unified framework for biomolecular system analysis, illustrating the approach with enzyme reactions and transporters.
Contribution
It introduces a bond graph interpretation of chemical reaction networks, bridging two independent modeling approaches for biomolecular systems.
Findings
Unified bond graph and chemical reaction network framework.
Application to enzyme-catalyzed reactions and trans-membrane transport.
Effective modeling of both closed and open systems.
Abstract
The Bond Graph approach and the Chemical Reaction Network approach to modelling biomolecular systems developed independently. This paper brings together the two approaches by providing a bond graph interpretation of the chemical reaction network concept of complexes. Both closed and open systems are discussed. The method is illustrated using a simple enzyme-catalysed reaction and a trans-membrane transporter.
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