A network biology-based approach to evaluating the effect of environmental contaminants on human interactome and diseases

TL;DR

This study employs network biology to assess how various environmental contaminants impact the human interactome and disease associations, revealing key target proteins and potential biomarkers for health risk evaluation.

Contribution

It introduces a novel network biology approach to quantify the effects of environmental contaminants on human proteins and diseases, integrating multiple data sources.

Findings

Contaminant targets are hub proteins in the human PPI network.

Few contaminants target many genes, and few genes are targeted by many contaminants.

Contaminant-targeted proteins are closely associated with disease-related proteins.

Abstract

Environmental contaminant exposure can pose significant risks to human health. Therefore, evaluating the impact of this exposure is of great importance; however, it is often difficult because both the molecular mechanism of disease and the mode of action of the contaminants are complex. We used network biology techniques to quantitatively assess the impact of environmental contaminants on the human interactome and diseases with a particular focus on seven major contaminant categories: persistent organic pollutants (POPs), dioxins, polycyclic aromatic hydrocarbons (PAHs), pesticides, perfluorochemicals (PFCs), metals, and pharmaceutical and personal care products (PPCPs). We integrated publicly available data on toxicogenomics, the diseasome, protein-protein interactions (PPIs), and gene essentiality and found that a few contaminants were targeted to many genes, and a few genes were targeted by many contaminants. The contaminant targets were hub proteins in the human PPI network, whereas the target proteins in most categories did not contain abundant essential proteins. Generally, contaminant targets and disease-associated proteins were closely associated with the PPI network, and the closeness of the associations depended on the disease type and chemical category. Network biology techniques were used to identify environmental contaminants with broad effects on the human interactome and contaminant-sensitive biomarkers. Moreover, this method enabled us to quantify the relationship between environmental contaminants and human diseases, which was supported by epidemiological and experimental evidence. These methods and findings have facilitated the elucidation of the complex relationship between environmental exposure and adverse health outcomes.