Synchronization Strings: Efficient and Fast Deterministic Constructions over Small Alphabets
Kuan Cheng, Bernhard Haeupler, Xin Li, Amirbehshad Shahrasbi, Ke Wu

TL;DR
This paper improves bounds on the minimal alphabet size for synchronization strings, provides efficient explicit constructions over small alphabets, and explores the extremal question of their existence over various alphabet sizes.
Contribution
It offers new lower and upper bounds on alphabet size for synchronization strings and presents fast explicit constructions over small alphabets.
Findings
Synchronization strings can be constructed over alphabets of size four.
No synchronization strings exist over binary alphabets for certain parameters.
Open problem remains on existence over ternary alphabets.
Abstract
Synchronization strings are recently introduced by Haeupler and Shahrasbi (STOC 2017) in the study of codes for correcting insertion and deletion errors (insdel codes). They showed that for any parameter , synchronization strings of arbitrary length exist over an alphabet whose size depends only on . Specifically, they obtained an alphabet size of , which left an open question on where the minimal size of such alphabets lies between and . In this work, we partially bridge this gap by providing an improved lower bound of , and an improved upper bound of . We also provide fast explicit constructions of synchronization strings over small alphabets. Further, along the lines of previous work on similar combinatorial objects, we study the extremal…
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Taxonomy
TopicsDNA and Biological Computing · Advanced biosensing and bioanalysis techniques · Algorithms and Data Compression
