Hamiltonian dynamics and distributed chaos in DNA
A. Bershadskii
TL;DR
This paper demonstrates that Hamiltonian DNA dynamics with broken time symmetry influence the DNA sequence patterns in Arabidopsis thaliana and human genes, revealing a link between physical chaos and genetic structure.
Contribution
It introduces the concept that distributed chaos from Hamiltonian DNA dynamics affects genetic sequences, connecting physical dynamics with genetic information.
Findings
Distributed chaos imprints on DNA sequences.
Hamiltonian dynamics influence genetic sequence patterns.
Analysis of Arabidopsis and human genes supports the theory.
Abstract
It is shown that distributed chaos, generated by Hamiltonian DNA dynamics with spontaneously broken time translational symmetry, imprints itself on the DNA sequence of Arabidopsis thaliana (a model plant for genetic sequencing and mapping) and of the NRXN1 and BRCA2 human genes (as an example). The base-stacking interactions in the DNA duplex and degenerate codon groups have been discussed in this context.
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Taxonomy
TopicsNonlinear Dynamics and Pattern Formation · Gene Regulatory Network Analysis · Evolution and Genetic Dynamics