$k$-Foldability of Words

TL;DR

This paper explores the combinatorial properties of words that can be folded onto rooted plane trees, extending previous results to characterize and enumerate such words, and analyzing the set of possible numbers of valid trees.

Contribution

It introduces a bijection between edge-colored plane trees and folded words, characterizes words with unique or two valid trees, and describes the set of possible valid tree counts for words of given length.

Findings

Characterized words with exactly one valid tree.

Extended enumeration of words with two valid trees.

Described the set of possible numbers of valid trees, including new intervals.

Abstract

We extend results regarding a combinatorial model introduced by Black, Drellich, and Tymoczko (2017+) which generalizes the folding of the RNA molecule in biology. Consider a word on alphabet $\{A_1, \overline{A}_1, \ldots, A_m, \overline{A}_m\}$ in which $\overline{A}_i$ is called the complement of $A_i$. A word $w$ is foldable if can be wrapped around a rooted plane tree $T$, starting at the root and working counterclockwise such that one letter labels each half edge and the two letters labeling the same edge are complements. The tree $T$ is called $w$-valid. We define a bijection between edge-colored plane trees and words folded onto trees. This bijection is used to characterize and enumerate words for which there is only one valid tree. We follow up with a characterization of words for which there exist exactly two valid trees. In addition, we examine the set $\mathcal{R}(n,m)$ consisting of all integers $k$ for which there exists a word of length $2n$ with exactly $k$ valid trees. Black, Drellich, and Tymoczko showed that for the $n$th Catalan number $C_n$, $\{C_n,C_{n-1}\}\subset \mathcal{R}(n,1)$ but $k\not\in\mathcal{R}(n,1)$ for $C_{n-1}<k<C_n$. We describe a superset of $\mathcal{R}(n,1)$ in terms of the Catalan numbers by which we establish more missing intervals. We also prove $\mathcal{R}(n,1)$ contains all non-negative integer less than $n+1$.