Tracer Kinetic Models as Temporal Constraints during DCE-MRI reconstruction

TL;DR

This paper introduces a novel method that incorporates tracer kinetic models as temporal constraints in DCE-MRI reconstruction, improving accuracy from under-sampled data without parameter tuning.

Contribution

The study presents a new approach that uses kinetic models as temporal bases for sparse reconstruction, enhancing DCE-MRI image quality from highly under-sampled data.

Findings

Accurately models kinetic profiles with low sparsity levels.

Achieves good fidelity in kinetic map recovery at high under-sampling factors.

Reduces bias and uncertainty compared to existing methods.

Abstract

Purpose: To apply tracer kinetic models as temporal constraints during reconstruction of under-sampled dynamic contrast enhanced (DCE) MRI. Methods: A library of concentration v.s time profiles is simulated for a range of physiological kinetic parameters. The library is reduced to a dictionary of temporal bases, where each profile is approximated by a sparse linear combination of the bases. Image reconstruction is formulated as estimation of concentration profiles and sparse model coefficients with a fixed sparsity level. Simulations are performed to evaluate modeling error, and error statistics in kinetic parameter estimation in presence of noise. Retrospective under-sampling experiments are performed on a brain tumor DCE digital reference object (DRO) at different signal to noise levels (SNR=20-40) at (k-t) space under-sampling factor (R=20), and 12 brain tumor in- vivo 3T datasets at (R=20-40). The approach is compared against an existing compressed sensing based temporal finite-difference (tFD) reconstruction approach. Results: Simulations demonstrate that sparsity levels of 2 and 3 model the library profiles from the Patlak and extended Tofts-Kety (ETK) models, respectively. Noise sensitivity analysis showed equivalent kinetic parameter estimation error statistics from noisy concentration profiles, and model approximated profiles. DRO based experiments showed good fidelity in recovery of kinetic maps from 20-fold under- sampled data at SNRs between 10-30. In-vivo experiments demonstrated reduced bias and uncertainty in kinetic mapping with the proposed approach compared to tFD at R>=20. Conclusions: Tracer kinetic models can be applied as temporal constraints during DCE-MRI reconstruction, enabling more accurate reconstruction from under- sampled data. The approach is flexible, can use several kinetic models, and does not require tuning of regularization parameters.