# Sampling molecular conformers in solution with quantum mechanical   accuracy at a nearly molecular mechanics cost

**Authors:** Marta Rosa, Marco Micciarelli, Alessandro Laio, Stefano Baroni

arXiv: 1704.06144 · 2017-04-21

## TL;DR

This paper presents a hybrid computational approach combining classical molecular dynamics, clustering, and quantum corrections to accurately evaluate conformer populations in solution at a computational cost comparable to molecular mechanics.

## Contribution

It introduces a novel method that achieves quantum mechanical accuracy in conformer population estimation with nearly molecular mechanics computational cost.

## Key findings

- Successfully applied to cyanin in water solution
- Achieves quantum accuracy with low computational expense
- Provides a quantitative accuracy assessment criterion

## Abstract

We introduce a method to evaluate the relative populations of different conformers of molecular species in solution, aiming at quantum mechanical accuracy, while keeping the computational cost at a nearly molecular-mechanics level. This goal is achieved by combining long classical molecular-dynamics simulations to sample the free-energy landscape of the system, advanced clustering techniques to identify the most relevant conformers, and thermodynamic perturbation theory to correct the resulting populations, using quantum-mechanical energies from density-functional theory. A quantitative criterion for assessing the accuracy thus achieved is proposed. The resulting methodology is demonstrated in the specific case of cyanin (cyanidin-3-glucoside) in water solution.

## Full text

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## Figures

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## References

24 references — full list in the complete paper: https://tomesphere.com/paper/1704.06144/full.md

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Source: https://tomesphere.com/paper/1704.06144