Frontier molecular orbitals of single molecules adsorbed on thin insulating films supported by a metal substrate: A simplified density functional theory approach
Ivan Scivetti, Mats Persson

TL;DR
This paper introduces a simplified DFT method to calculate electron and hole attachment energies of molecules on insulating films supported by metals, revealing how the energy gap varies with film thickness and the influence of image interactions.
Contribution
A new simplified DFT approach for studying frontier orbitals of molecules on supported insulating films, incorporating an implicit metal model and dielectric analysis.
Findings
Energy gap increases with film thickness, matching experimental trends.
Dielectric model explains the gap variation, dominated by image interactions.
Overestimation of gap shift in infinitely thick films by the model.
Abstract
We present a simplified density functional theory (DFT) method to com- pute vertical electron and hole attachment energies to frontier orbitals of molecules absorbed on insulating films supported by a metal substrate. The adsorbate and the film is treated fully within DFT, whereas the metal is treated implicitly by a perfect conductor model. As illustrated for a pentacene molecule adsorbed on NaCl films sup- ported by a Cu substrate, we find that the computed energy gap between the highest and lowest occupied molecular orbitals - HOMO and LUMO -from the vertical attach- ment energies increases with the thickness of the insulating film, in agreement with experiments. This increase of the gap can be rationalized in a simple dielectric model with parameters determined from DFT calculations and is found to be dominated by the image interaction with the metal. However, this model…
| (Å) | (Å) | ||
|---|---|---|---|
| 2 | 2.69 | 6.46 | 1.66 |
| 3 | 2.63 | 9.21 | 1.68 |
| 4 | 2.63 | 12.12 | 1.65 |
| 5 | 2.62 | 14.89 | 1.67 |
Peer Reviews
No public reviews on file for this paper yet. If you reviewed it on a platform where reviews are public (OpenReview, ICLR, NeurIPS, ICML), you can paste yours below so the community can read it here.
Videos
No videos yet. Explain this paper in a talk, walkthrough, or lecture? Add one.
Frontier molecular orbitals of single molecules adsorbed on
thin insulating films supported by a metal substrate: A simplified density functional theory approach
Iván Scivetti and Mats Persson
Surface Science Research Centre and Department of Chemistry University of Liverpool Liverpool L69 3BX UK
Abstract
We present a simplified density functional theory (DFT) method to compute vertical electron and hole attachment energies to frontier orbitals of molecules absorbed on insulating films supported by a metal substrate. The adsorbate and the film is treated fully within DFT, whereas the metal is treated implicitly by a perfect conductor model. As illustrated for a pentacene molecule adsorbed on NaCl films supported by a Cu substrate, we find that the computed energy gap between the highest and lowest occupied molecular orbitals - HOMO and LUMO -from the vertical attachment energies increases with the thickness of the insulating film, in agreement with experiments. This increase of the gap can be rationalized in a simple dielectric model with parameters determined from DFT calculations and is found to be dominated by the image interaction with the metal. However, this model overestimates the downward shift of the energy gap in the limit of an infinitely thick film. This work provides a new and efficient strategy to extend the use of density functional theory to the study of charging and discharging of large molecular absorbates on insulating films supported by a metal substrate.
Keywords: insulating film, metal substrate, adsorbates, charged system, frontier molecular orbitals, density functional theory
pacs:
68.37.Ef 73.20.Mf 73.22.-f
1 Introduction
A remarkable capability of scanning probe microscopy is the possibility to form and control different (meta-)stable charged states of single atoms and molecules adsorbed on thin insulating films supported by a metal substrate [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17]. These charged states can be manipulated and characterized on the atomic scale by scanning tunnelling microscopy (STM) [1, 2, 3, 4, 5, 6, 7, 8, 9] atomic force microscopy (AFM) [7, 8, 9, 10, 11, 12, 13, 14, 15, 16] and Kelvin probe force microscopy (KPFM) [16, 17]. Charged states in molecular adsorbates are formed either by electron attachment to the lowest unoccupied molecular orbital (LUMO) or hole attachment to the highest occupied molecular orbital (HOMO) [3]. Control over the occupancy of frontier molecular states is crucial to alter selectively the catalytic properties of single adsorbates. Such a capability plays a decisive role in the field of molecular electronics, for example, where the ultimate goal is to use single molecules as functional building blocks for switches, rectifiers, transistors and memory [3, 4, 5, 14, 18, 19, 20, 21, 22, 23, 24, 25]
Charge states of adsorbates can be stabilised either by having a sufficently large polarization of the ionic film and the metal substrate or a sufficiently long lifetime using a sufficiently thick film to increase their life time. For example, the Au anion adsorbed on a NaCl bilayer is stabilized by the large polarization of the ionic film and the metal substrate [1] , whereas in the case of a pentacene molecule adsorbed on this bilayer, this polarization is neither sufficently large to stabilize the anion or the cation[3]. In contrast, for pentacene molecule on NaCl films thicker than 13 monolayers (ML), the electron transfer through the film is quenched and the life time is sufficiently large so that both the cation and the anion become stable on the time scale of the experiments [14]. Nevertheless, the energies of frontier molecular orbitals is found to depend on film thickness. In fact, scanning tunneling spectroscopy of ultra-thin films ( 3ML) and AFM experiments of thick films ( 20ML) showed that the HOMO-LUMO gap of adsorbed pentacene increases with increasing the film thickness, but this gap was always smaller than its value in gas phase. This behaviour calls for calculations to gain a deeper insight into the interplay between metal substrate and film thickness in determining the energies of the frontier orbitals of the molecular adsorbates.
In principle, the electron and hole attachment energies which determine, for instance, the observed HOMO-LUMO gap of molecular adsorbates cannot simply be computed using ground state density functional theory (DFT) [26, 27], and an excited-state theory such as the GW approximation is required [28]. However, GW calculations are very expensive for typical molecular adsorbates [29] and have so far only been applied to a CO molecule adsorbed on NaCl films supported by a semi-conductor [30].
For adsorbates on thin insulating films supported by a metal substrate even the computation of ground state energies for stable charged states can be very challenging at the DFT level [1, 2, 5] due to the charge-delocalisation error introduced by current exchange-correlation functionals [31, 32]. This error often leads to fractional charging, a problem which sometimes can be eliminated using a DFT+U approach [33, 34]. This approach has been successfully applied to the calculation of multiply charged states of Ag adatoms [2].
A simplifying feature of this class of system is the insulating character of the ionic film, which significantly reduces the coupling of the adsorbate electronic states with the metal electronic states, and forms the basis for approximate schemes [35]. This weak coupling was considered previously in DFT calculations of electron attachment energies to vacancy states in a NaCl bilayer on a Cu surface by constraining the vacancy state to be occupied [16]. Recently, we developed an approximate method where the metal electrons are eliminated completely but the ionic film and the adsorbate are treated fully within DFT [36, 37]. The metal is simply replaced by a perfect conductor (PC) model and the remaining non-Hartree interactions between the metal substrate and the film are modelled by a simple force field (FF) whose parameters are obtained from full DFT calculations of the ionic film supported by the metal substrate. By construction, this new method (DFT-PC-FF) makes it possible to control the charge state of the adsorbate with a large reduction of the computational time. This method was applied successfully to the calculation of the Au anion on a NaCl bilayer supported by a Cu substrate [37].
In this work, we show how DFT-PC-FF simulations can be used to compute the energies of frontier molecular orbitals of adsorbates on insulating films supported by a metal substrate. As an example, we consider pentacene adsorbed on NaCl films of different thicknesses which are supported by a Cu substrate. In agreement with experiments, we find that the HOMO-LUMO gap increases with increasing number of NaCl layers. In addition, our findings are compared with the results from a simple dielectric model of the adsorbed film with abrupt interfaces. We show that this simplified model is able to semi-quantitatively describe the variation of the HOMO-LUMO gap with film thickness but has also some shortcomings.
The paper is organised as follows. In Section 2 we describe the main ingredients of the DFT-PC-FF method and its application to the calculation of electron and hole attachment energies to an adsorbed molecule and the corresponding HOMO-LUMO gap. Computational details are presented in Sec. 3. Results for the electronic structure and the HOMO-LUMO energy gap for the isolated molecule are presented in Section 4.1. Results for the variation of this energy gap of an adsorbed pentacene molecule on NaCl films with the number of layers are presented and compared with experiments in Section 4.2. In this latter section we also compare the calculated and experimnental energy gaps with the results from a simple dielectric model in order to elucidate the contributions from the film and the metal substrate. Finally, some conclusing remarks of this work are presented in Section 5. Electrostatic units are used throughout in this paper.
2 Computation of charged states of adsorbates with DFT-PC-FF
The DFT-PC-FF method for the calculations of charged adsorbates on an ionic insulating film supported by a metal substrate has been described in detail in our previous work [36, 37]. Here, we just summarise the key points of this method and how it can be used to calculate the electron and hole attachment energies to an adsorbed molecule and the corresponding HOMO-LUMO gap.
In the DFT-PC-FF method, the electrons of the metal substrate are not explicitly included in the calculation but their screening is accounted for in a perfect conductor (PC) model. The residual non-Hartree interactions between the film and metal substrate are described by a force field (FF). The system is represented in a supercell with a prescribed total charge of the adsorbate and film, which is compensated by an induced charge in the PC, so that the supercell is neutral. The total energy of the system is then given in this method by minimising the following energy functional
[TABLE]
with respect to the electron density of the adsorbate and the film under the constraint that the total charge of the electrons and the ions is . Here, is the energy functional of the adsorbate and the film system interacting with the PC and is the effective work function. As detailed in Ref. [37], the difference between and the workfunction of the film supported by the explicit metal substrate (with no absorbate) is due to the overlap of the electron density of the film with the image plane in the PC model. This overlap gives rise to a potential difference between the PC plane and the vacuum level. The residual non-Hartree interactions between the film and metal substrate are described by a simple force-field (FF) based on non-polarisable pair potentials, which only depends on the perpendicular distance between the ions in the first layer of the film and the image plane. Besides the atom kinds of the adsorbate and the films, the material specific parameters in the DFT-PC-FF method are the position of the image plane in the PC model with respect to the metal surface plane, the effective work function and the pair potentials in the FF. How these parameters were determined is described in Section 3.
In scanning tunneling spectroscopy and AFM experiments, the bias voltages corresponding to attaching a tunneling electron or hole to the adsorbate are determined by the transition energies and for attaching an electron or a hole from the Fermi level to the adsorbate at fixed ion-core positions, respectively. In the DFT-PC-FF method these energies are approximated by the following vertical transition energies
[TABLE]
where the energies of the negatively charged state and positively charged state are obtained at the calculated equilibrium geometry for the molecule in its ground state with charge . Note that in the presence of a metal support these charge states are not electronic ground states but are resonances due to mixing with metallic states. However, this mixing is already very weak, for instance, for a pentacene molecule adsorbed on a NaCl bilayer due to its insulating character, resulting in very narrow resonances with an estimated broadening of a few hundreds of an eV [3]. Thus, the ground state energies obtained by neglecting this mixing should be an excellent approximation to these resonance energies. Since the system is represented in a supercell, the computed results are expected to depend on the surface area or coverage due to electrostatic adsorbate-adsorbate interactions. Thus, it is necessary to correct and for the dipole-dipole interactions between periodic images, as described in A.
If the adsorbed molecule is neutral () as for the adsorbed pentace molecule then the HOMO-LUMO gap can be obtained from the vertical transition energies and as follows
[TABLE]
Note that this result for is independent of the (effective) work function of the metal and the film. For a reference, the corresponding HOMO-LUMO gap for an isolated neutral molecule, , was also calculated from the vertical affinity and ionisation energies as
[TABLE]
where is the total energy of the isolated molecule with a net charge of in the equilibrium geometry of the neutral molecule.
3 Computational details
Periodic DFT calculations were performed using the VASP code [38, 39]. All the required modifications for the implementation of the DFT-PC-FF method in VASP have already been detailed in Refs. [36] and [37]. The projector augmented wave method (PAW) [40, 41] was used to describe the electron-ion interaction with a plane wave cut-off energy of 400 eV. The electronic exchange and correlation effects were treated using the optB86b-vdW version of the van der Waals (vdW) density functional [42, 43]. The NaCl bilayer supported by a Cu(100) substrate was modelled using a slab in a supercell. As detailed in Ref. [37], each primitive surface unit cell was composed of four layers of Cu atoms with nine Cu atoms in each layer, and a NaCl film that contained four atoms of each species in each layer. Note that in the DFT-PC-FF simulations this unit cell only contained the eight atoms of the NaCl film.
The Cu substrate was included explicitly just to compute the pentacene molecule adsorbed on a NaCl bilayer in order to make a comparison with the DFT-PC-FF results. We shall refer to this calculation as DFT-full. In this calculation, the supercell included repetitions of the primitive surface unit cell.
In the DFT-PC-FF method, the dependence on the lateral size of the supercell was investigated for the NaCl bilayer using supercells containing , , and repetitions of the primitive surface unit cell. In the case of NaCl films thicker than the bilayer only supercells containing the surface unit cells were considered. The lateral sizes of the supercells were sufficiently large to limit the sampling of the surface Brillouin zone to the -point. All ionic relaxations were carried out with a convergence criteria of 0.02 meV/Å for the magnitude of the forces. The density of states of partial waves (PDOS) around the various atom sites were obtained using the PAW method.
As reported in Ref. [37] for the Cu(100) substrate, the value of 1.48 Å for was obtained from the calculated response of this substrate to an external electric field. A value of 3.24 eV for was obtained from the calculated electrostatic potential and eV was the computed work function of the supported NaCl bilayer including the Cu(100) substrate in the DFT-full simulation. Furthermore, the functional form and the parameters of the pair potentials are the same as for the non-polarisable FF developed in Ref. [37], which were obtained from DFT calculations of the NaCl bilayer on the Cu(100) substrate.
In order to calculate from Eq. (5) of the isolated pentacene moleculecule, spin-polarized calculations using the Makov-Payne scheme[44] were performed for a positively and negatively charged molecule in a cubic supercell. Total energies including dipole corrections were converged for a supercell with a side length of 30 Å.
4 Results
In this section, we present the results of the DFT-PC-FF simulations for the vertical transition energies and and the corresponding HOMO-LUMO gap, , for a single pentacene molecule adsorbed on NaCl films with different number of atomic layers. Computed energies are compared with experimental results. In addition, we present and discuss results for a simplified electrostatic model of this system. We begin by addressing the problem of an isolated pentacene molecule in vacuum.
4.1 Isolated pentacene molecule
As a reference case, the electronic states and the HOMO-LUMO gap of the isolated pentacene molecule were also computed. The energies of the orbitals of the molecule were revealed by the calculated PDOS of states of all C atoms of the neutral molecule, as shown by the dashed red lines in Fig. 1(a). The calculated orbital densities of the frontier orbitals – HOMO and LUMO – which are of character are shown in the upper panel of Fig. 2. As expected from DFT calculations using a GGA-like approximation like the optB86b-vdW for the exchange-correlation functional, the calculated band gap from the computed Kohn-Sham (KS) energies of the HOMO and LUMO is 1.14 eV, which severely underestimates the experimental value of 5.27 eV [45, 3]. In contrast, DFT calculations of the total energies of the positively and negatively charged, as well as the neutral molecule in the equilibrium geometry of the neutral molecule, as detailed in Sec.3 and using Eq. (5), gave a much improved value of = 4.62 eV. This result is in good agreement with the value of 4.73 eV from previous DFT calculations using the PBE functional[46], and the result of 4.72 eV from time-dependent DFT calculations using the B3LYP functional [47].
4.2 Pentacene adsorbed on the NaCl bilayer supported by a Cu(100) surface
DFT-full calculations show that the adsorbed molecule on the NaCl bilayer supported by the Cu(100) surface is neutral and preserves the planar geometry [48] of the isolated free molecule with negligible changes in the interatomic distances. In the most stable configuration of the adsorbed molecule, the central aromatic ring is on top of a Cl anion with a distance of 3.05 Å from the outermost NaCl layer. This large distance and the rather weak adsorption energy of 1.65 eV is due to the closed-shell electronic structure of pentacene and the formation of a physisorption bond. Results obtained using the DFT-PC-FF calculations give a very similar molecule-surface distance of 3.06 Å and an adsorption energy of 1.68 eV. This good agreement provides strong support for our proposed DFT-PC-FF method, especially considering also the massive reduction of the computational time by a factor of about 70 compared to the DFT-full calculations.
The electronic structure of absorbed pentacene was analysed using the PDOS of the C- states of pentacene (the orbitals) and the states of the ions in the NaCl bilayer. Results for DFT-FF-PC and DFT-full are shown in Fig. 1(a) and (b), respectively. In addition, C- states of isolated pentacene are shown in Fig. 1(a) as a reference.
A comparison between the PDOS of the DFT-full calculations of adsorbed pentacene and the DFT calculations of isolated pentacene show that there is no discernible broadening of of the orbitals due to their interaction with the states of the film and the substrate. In addition, the orbitals of adsorbed pentacene, except the orbital around -6.35 eV, experience only a small rigid downward shift of about 0.30 eV with respect to the vacuum level. The smaller shift of the orbital at -6.35 eV is due to its interaction with states of the ions in the film. the DFT-full results show that the HOMO level is 1.09 eV below the Fermi energy (), whereas the LUMO is just above . Finally, the PDOS of the states of the ions NaCl in the bilayer shows up as a broad distribution, which is a result of their interaction with the Cu substrate states.
A comparison between the upper and middle panels of Fig.2 show that the electron densities of the HOMO and the LUMO of the adsorbed neutral molecule computed with DFT-PC-FF are very similar to the corresponding orbital densities of the isolated molecule and exhibit the same nodal structure. In addition, the difference between the KS energies gives a HOMO-LUMO gap of 1.17 eV, which is very close to the corresponding KS value of 1.14 eV for the isolated molecule. From Fig. 1, one finds that the states of all the C atoms using the DFT-PC-FF method are in excellent agreement with the DFT-full results obtained by the explicit inclusion of the Cu(100) substrate. This agreement shows that the mixing of the orbitals with Cu states are negligible and provides further support to the application of the DFT-PC-FF method to this system.
4.3 Frontier orbitals energy gaps and ionic resonances
The anion and cation states of the adsorbed pentacene molecule on the NaCl(2ML)/Cu(100) were calculated using the DFT-PC-FF method by adding a single electron or hole to the neutral adsorbed pentacene on the NaCl bilayer at a fixed geometry corresponding to the calculated equilibrium geometry of the neutral molecule and film. Since the charging and discharging results in an odd number of electrons, spin polarisation was included in the simulations. The characters of the highest occupied orbitals following charging and discharging are demonstrated by the calculated orbital densities in lower panel of Fig. 2. These densities correspond to a singly occupied molecular orbital (SOMO) and a single unoccupied molecular orbital (SUMO) for the cation and the anion, respectively, which are very similar in shape to the LUMO and HOMO of the isolated and absorbed molecule, respectively.
In the case of an adsorbed pentacene on a NaCl bilayer, Fig. 3 shows the calculated vertical electron and hole attachment energies and for different lateral sizes of the supercell or coverage, as obtained from Eq.(2) and (3). Here, the effective lateral size is defined by where and are the lengths of the supercell along and directions, respectively. Due to long-range electrostatic interactions between the periodic replica of the adsorbed molecule, and converge slowly with increasing to their zero-coverage values of a single adsorbed molecule. An extrapolation of and to the zero-coverage limit is done here by subtracting the dominant long-range electrostatic interaction, the dipole-dipole interaction, between the periodic replica, as detailed in A. This dipole correction improve considerably the convergence to the zero-coverage limit, as shown by the dipole-corrected energies and in Fig. 3. Note that the corresponding dipole-dipole interactions in the perpendicular direction are already cancelled by the dipole correction provided by the dipole layer in the vacuum region [36, 37]. Using the dipole-corrected energies we obtain zero-coverage values of 2.06 and 0.95 eV for and , respectively. The corresponding HOMO-LUMO gap , as obtained directly from and using Eq. (4), is equal to 3.01 eV. This value is substantially larger than the value of 1.17 eV obtained from the calculated KS energies for the HOMO and the LUMO of the neutral adsorbed molecule. Interestingly, the value of 3.01 eV is a bit less than the the calculated value of 4.62 eV of for the isolated molecule. We attribute this difference to the electronic polarisation of the positively and negatively charged molecule by the NaCl film.
The calculated vertical electron and hole attachment energies can be compared with the experimental energies for the positive and negative ionic resonances (NIR and PIR) by scanning tunneling spectroscopy of a single pentacene molecule adsorbed on NaCl films supported by a Cu(100) substrate [3]. A comparison of STM images at the biases of the NIR and PIR with computed images showed that these resonances correspond to electron and hole attachment from the tip to the LUMO and HOMO of the molecule, respectively. The observed values of 1.3 and -2.8 V for the sample biases of the NIR and PIR, respectively, give = 1.3 eV and 2.8 eV and a value of 4.1 eV for . Thus, the experimental value of is reduced by approximately 1.17 eV upon adsorption on the bilayer. Surprisingly, the deviation of about 1.09 eV between the experimental (4.1 eV) and computed value (3.01 eV) for is somewhat a bit larger than the corresponding deviation of 0.65 eV for the isolated molecule in vacuum (5.27 eV and 4.62 eV for experimental and computed , respectively, as reported in section 4.1).
Here, the effect of the NaCl film on was investigated by calculating as a function of the number of monolayers of the film. In these calculations, the values of from 2 to 5 ML were obtained from the dipole-corrected and for a supercell with surface unit cell (see Section 3) corresponding to 26.5 Å. Computed values of as a function of are shown in Fig.4 (a). In addition, we have included the calculated gap from the KS energies as well as the experimental values taken from Ref.[3]. For a comparison, we also show in dashed lines computed and experimental values of the isolated molecule. The observed increase of with increasing is reproduced by calculated values. In particular, the observed reduction of about 0.3 eV for the experimental values of between the bilayer () and the trilayer () is rather well reproduced by the calculated reduction of 0.22 eV.
The increase of with can be understood in a simple dielectric model from the screening by the metal substrate and the film, as detailed in B. The metal is modelled by a perfect conductor, whereas the film is modelled by an homogeneous dielectric with an effective thickness and electronic dielectric constant (see Fig. 5). The values of these parameters and the distance between the dielectric vacuum interface and the average NaCl surface layer position were determined by applying an homogeneous external electric field to the adsorbed film, as detailed in C. The electronic dielectric constant and were both found to be essentially independent of with 2.64 and 1.66 Å, while the effective thickness of the film was well-approximated by for where Å and 2.81 Å. The value for is essentially equal to the interlayer distance. In addition, the lateral extension of the surface charge distribution of the positively and negatively charged molecule has simply been modelled as an homogeneously charged rectangular sheet with a net charge of . The values for the side lengths 14.1 Å and 5.0 Å of the sheet were simply determined from the length and width of the pentacene molecule.
In this model, the layer dependence of the energy difference between the energy gap for the adsorbed and isolated molecule is given by (See B)
[TABLE]
where is the distance of the molecule from the dielectric-vacuum interface and the lateral Fourier transform of the charged sheet is given by Eq.(22). Here, is determined from the calculated equilibrium distance Å of the molecule from the outermost NaCl layer, as =1.36 Å. The resulting is shown in Fig. 4(b). A better understanding of the dependence in this model is obtained from an asymptotic expansion for large , which is given by (see, B),
[TABLE]
Here, the effective charges take into account the lateral extension of the charge distribution of the charged molecule and are defined in Eq. (24). In the case of a point charge with charge , but decreases for an increasing lateral extension of the charge distribution. In the case of our simple model for the charge distribution of the HOMO and LUMO of pentacene the reduction is quite substantial and but much less so for due to the much larger distance of the molecule from the metal surface than its distance from the dielectric film. The leading order term on the right hand side of Eq. (7) gives the energy gap of the molecule adsorbed on a bulk dielectric, whereas the second term gives the contribution to from the image interaction with the metal surface screened by the dielectric film. The asymptotic result in Eq.(7) for is also shown in in Fig. 4 (b) and is close to the full result from Eq. (4.3). Here, we have also illustrated that the dielectric screening of the image interaction with the metal gives rise to relatively small reduction of in this case by showing the corresponding result for the unscreened image interaction with the surface.
As shown in Fig. 4 (b), from a comparison of the results of the dielectric model for with the calculated results using DFT-PC-FF, the bulk limit of is severly overestimated by the dielectric model. The dielectric model gives a value of -1.25 eV in this limit for whereas an extrapolation of the calculated values to gives a value of only about -0.58 eV for the downward shift. The corresponding extrapolated value from the experiments gives even a smaller downward shift of -0.28 eV but might not be a significant difference due to the uncertainties in experimental values [49]. The significant overestimate of the downward shift in the bulk limit of in the dielectric model demonstrates the challenges of modelling the response of an ionic insulating film to a charged adsorbate at a close distance where the electron density distributions of the dielectric film and the charged molecule are not well-separated. The variation of obtained from DFT-PC-FF is better described with the dielectric model than the bulk limit but tends to underestimate this variation. A somewhat surprising behaviour of the measured is its near-linear behaviour even down to , which is not really captured either by the DFT-PC-FF calculation or the dielectric model. However, this difference in behaviour might not be significant due to the uncertainities in the experimental values [49].
5 Summary and conclusions
In this work, we have addressed the problem of calculating electron and hole attachment energies of an adsorbed molecule, whose electronic states are essentially decoupled from the conduction electron states of the metal substrate by an insulating film. To this purpose, we have used our recently developed DFT-PC-FF method, where both the film and the adsorbed molecule are treated fully within DFT, whereas the metal substrate is treated implicitly by a perfect conductor (PC) model. The remaining non-Hartree interactions between the metal substrate and the film are modelled by a simple force field (FF) whose parameters are obtained from DFT calculations.
As an example case, we have considered a pentacene molecule adsorbed on NaCl films supported by a Cu(100) surface and compared our results with scanning tunneling spectroscopy and atomic force microscopy experiments. Support for our method comes from the very good agreement of the DFT-PC-FF results for the relaxed geometry and adsorption energy of the adsorbed molecule on an NaCl bilayer supported by a Cu(100) surface with the results from our DFT calculations which include the metal substrate explicitly. The adsorbed molecule is found to be neutral and keeps the planar geometry of gas phase. The molecule is physisorbed on the film as evidenced by the calculated PDOS which shows that the frontier orbitals experience only a small rigid shift in energy.
The calculated HOMO-LUMO energy gap for a fixed geometry increases with the number of NaCl layers in agreement with the experiments. The calculated energy gap underestimate somewhat the experimental gap, in part due to the underestimate of the observed gap of the isolated molecule by the used exchange-correlation energy functional. The calculated energy gap is much improved over the energy gap as obtained from the calculated KS energies for the HOMO and the LUMO.
The layer dependence of the calculated energy gap was analyzed in a simple dielectric model of the adsorbed film with parameters taken from DFT calculations of the response of the adsorbed film to an external electric field. This model rationalizes semi-quantitatively the observed behaviour of the energy gap with the number of layers and elucidates the contributions from the film and the metal substrate to the shift of the energy gap with the number of layers. In particular, this model reveals that the decrease of the energy gap with decreasing number of layers is primarily due to the electrostatic interaction with the metal. Nevertheless, values calculated with this model depart significantly from the experimental and the calculated DFT-PC-FF values. This highlights the challenges of building a proper electrostatic model of charged adsorbates on a insulating film.
The authors acknowledge Leverhulme Trust for funding this project trough the grant (F/00 025/AQ) and allocation of computer resources at HECToR through the membership in the materials chemistry consortium funded by EPSRC (EP/L000202F) and at Lindgren PDC through SNIC. We also thank Prof. Jasha Repp and Dr. Gerhard Meyer for useful input. Mats Persson is grateful for the support from the EU project ARTIST.
Appendix A Dipole-dipole energy correction from the interaction between periodic
images
In periodic DFT calculations the adsorbate coverage is determined by the lateral size of the supercell. In order to study single adsorbates corresponding to the zero coverage limit one needs to perform calculations for increasing lateral sizes of the supercell in order to extrapolate the results to the limit of infinite lateral size or zero coverage. This task can be computationally very demanding due to the slow convergence caused by long-range electrostatic interactions of the adsorbate with its periodic images. The dipole-dipole interaction term is the leading order term of these interactions. Here we provide an explicit expression for lateral dipole-dipole energy correction in the PC model for charged adsorbates which significantly improves the convergence to the zero-coverage limit. Note that the perpendicular dipole-dipole interactions are already corrected for by the introduction of a dipole layer in the vacuum region.
Following the notation introduced in Ref. [36] for the PC model is the charge density of the charged system that includes both the insulating film and the charged adsorbate inside a supercell and is the induced charge at the PC plane which is located at the image position of the bare metal substrate . The resulting electrostatic potential has not only a contribution from but also a contribution from a dipole layer at a plane in the vacuum region which compensates for the perpendicular dipole-dipole interactions. The undetermined constant of is fixed by the condition that inside the metal. The corresponding charge density and electrostatic potential in the absence of the charged adsorbate is denoted by and respectively. The change in electrostatic interaction energy upon adsorption is then given by
[TABLE]
where is the volume of the supercell and . The first term in Eq. (9) is the electrostatic potential energy of the localized adsorbate-induced charge density in the potential and will be rapidly convergent with increasing lateral size of the supercell. The two remaining terms in Eq. (9) can be handled by introducing the electrostatic field from the charge distribution induced by the adsorbate in the zero-coverage limit
[TABLE]
The potential can now be expressed in terms of as a sum over the lateral lattice vectors as
[TABLE]
Note that it is sufficient to restrict the summation over due to the inclusion of the dipole layer in the supercell. Using this decomposition and the periodicity of the second term in Eq. (9) is given by
[TABLE]
which is nothing else than its zero coverage limit. Thus only the third term on the RHS in Eq. (9) contains the long-range electrostatic interactions and is given in term of the decomposition in Eq. (11) as
[TABLE]
The term converges rapidly to the zero-coverage limit and the remaining terms which are the electrostatic potentials from the periodic images can be approximated by a multipole expansion. The leading order term in this expansion of the electrostatic potential of the neutral charge distribution will be a dipole potential given by
[TABLE]
Note that the screening by the perfect conductor gives rise to a dipolar electrostatic field with an effective dipole moment which is twice as large as the dipole moment of the adsorbate-induced charge distribution given by
[TABLE]
From Eqs.(13),(14) and (15) one obtains that the electrostatic interaction energy from the periodic images is given by
[TABLE]
This interaction energy is repulsive and should be subtracted from the calculated total energies in order to correct for the dipole-dipole interactions between the periodic images. The lattice sum in Eq. (16) can be readily evaluated numerically. For a supercell with a square lateral shape of side length this interaction energy decays as
Finally note that this result as applied to an external charge outside the PC differs from the result that would be obtained from Eqs. (59) (62) and (63) in Ref. [36] in one important aspect. The results in Eqs. (59) and (62) were obtained from the electrostatic potential of rather than from as done here. Thus the result in Ref. [36] contains a contribution that decays as as first pointed out by G. Makov and M. C. Payne [44].
Appendix B A simple dielectric model of the adsorbed film
Here, we will derive the interaction energy for an external surface charge distribution outside a dielectric film supported by a perfect conductor (PC) model of the metal substrate. In this model, the shift of the HOMO-LUMO energy gap from its value for an isolated molecule is then given by the sum of the corresponding electrostatic interaction energies of the charge distributions for both the positively and negatively charged molecule with the supported film. As illustrated schematically in Fig. 5, the metal is modelled by a PC and the adsorbed film by a homogeneous dielectric film with thickness and dielectric constant . Here we will use the notation .
The interaction energy of an external surface charge distribution at a distance from the dielectric film is given by,
[TABLE]
where is the lateral Fourier transform of and . is the reflection coefficient from the dielectric-vacuum interface at of the evanescent plane wave component of the external electrostatic potential from . In the region , the plane wave component of the electrostatic potential is then given by
[TABLE]
The reflection coefficient and the coefficients and in Eq. (18) can now be determined from the boundary conditions that the parallel component of the electric field and the perpendicular component of the external electric field should be both continuous across the two interfaces. These boundary conditions gives,
[TABLE]
In the asympotic limit of a thick dielectric film corresponding to , in Eqns.(19) reduces to,
[TABLE]
Here we will go beyond the simple point charge model for the charge distribution of an adsorbed molecule with charge and take into account of the lateral extension of this charge distribution by using the following simple rectangular surface charge distribution
[TABLE]
whose Fourier transform is given by
[TABLE]
The corresponding are then readily calculated from Eqs.(17) thanks to the exponential decay of the integrand with using a two-dimensional numerical quadrature .
The asymptotic interaction energy as obtained from in Eqs.(20) and (22) can now be expressed as,
[TABLE]
where the effective charges are given by,
[TABLE]
Here, and are the distances between the external charge and the surface of the dielectric film and the perfect conductor, respectively. Note that the first term in (23) is the interaction energy of the external charge distribution with a semi-infinite dielectric and the second term reduces to the corresponding interaction energy with a perfect conductor in the absence of the dielectric film . Thus the prefactor in the second term is due to the dielectric screening by the film.
Appendix C Determination of dielectric parameters for the adsorbed film
Here we show how the effective thickness of the ionic insulating film and its effective electronic dielectric constant were determined from the calculated response of the adsorbed film to an external homogeneous electric field for fixed nuclear positions. This electric field was included in our DFT-full and DFT-PC-FF calculations using the method described in Ref. [37]. Results for the induced electrostatic potentials are shown in Fig. 6 in the presence of a relatively weak external field of 0.05 eV/Å. The dielectric parameters were obtained by a least square fit of the calculated potentials to the induced electrostatic potential obtained in a dielectric model of the film and a perfect conductor model of the metal. Using standard electrostatics, one obtains the following potential across the dielectric film and the perfect conductor,
[TABLE]
This fit of the computed using DFT-full for the NaCl bilayer on the explicit Cu(100) surface to the model in Eq. 25 gives and Å. This fit using the results from DFT-PC-FF gives and Å. In the case of a free-standing NaCl bilayer, a fit of a similar model potential for an free-standing dielectric film to the computed gives and Å. This value of 2.5 for is close to our calculated value of 2.47 for bulk NaCl using density functional perturbation theory method in VASP. Note that the value of 6.3 Å for is much larger than the distance of 2.87 Å between the two layers of the free-standing bilayer. The corresponding results for to 5 obtained by DFT-FF-PC are shown in Table 1 and the dielectric response of the film is well-represented by the average values of 2.64 and 1.66 Å for and , respectively. Furthermore the layer dependence of is well represented by for to 5 where 0.84 Å and 2.81 Å.
References
- [1] Repp J, Meyer G, Olsson F E and Persson M 2004 Science 305 493
- [2] Olsson F E, Paavilainen S, Persson M, Repp J and Meyer G 2007 Phys. Rev. Lett. 98 176803
- [3] Repp J, Meyer G. Stojković S M, Gourdon A and Joachim C 2005 Phys. Rev. Lett. 94 026803
- [4] Repp J, Meyer G, Paavilainen S, Olsson F E and Persson M 2006 Science 312 1196
- [5] Mohn F, Repp J, Gross L, Meyer G, Dyer M S and Persson M 2010 Phys. Rev. Letter 105 266102
- [6]
Steurer W, Gross L and Meyer G. 2014 Appl. Phys. Lett. 104 231606
- [7]
Schuler B, Meyer G, Pena D, Mullins O C and Gross L 2015 J. Am. Chem. Soc. 137 9870-9876
- [8]
Pavliček N, Schuler B, Collazos S, Moll N, Perez D, Guitian E, Meyer G, Pena D and Gross L 2015 Nat. Chem. 7 623-628
- [9]
Mohn F, Schuler B, Gross L and Meyer G 2013 Appl Phys. Lett. 102 073109
- [10]
Moll N et al. 2014 Nano Letters 324 6127-6131
- [11]
Gross L, Mohn F, Liljeroth P, Repp J, Giessibl F J and Meyer G 2009 Science 324 1428-1431
- [12]
Majzik Z, Cuenca A B, Pavliček N, Miralles N, Meyer G, Gross L and Fernandez E 2016 ACS Nano 10 5340-5345
- [13]
Steurer W, Repp J, Gross L, Scivetti I, Persson M and Meyer G 2015 Phys. Rev. Lett. 114 036801
- [14]
Steurer W, Fatayer S, Gross L and Meyer G 2015 Nat. Comm. 6 8353
- [15]
Schuler B, Fatayer S, Mohn F, Moll N, Pavliček N, Meyer G, Pena D and Gross L 2016 Nat. Chem. 8 220-224
- [16]
Gross L, Schuler B, Mohn F, Moll N, Pavliček N, Steurer W, Scivetti I, Kotsis K, Persson M and Meyer G 2014 Phys. Rev. B 90 155455
- [17]
Schuler B, Liu SX, Geng Y, Decurtins S, Meyer G and Gross L 2014 Nano Letters 14 3342-3346
- [18]
Liljeroth P, Repp J and Meyer G 2007 Science 317 1203-1206
- [19]
Quek S Y, Kamenetska M, Steigerwald M L, Choi H J, Louie S G, Hybertsen M S, Neaton J B and Venkataraman L 2009 Nat Nanotechnol 4 230-234
- [20]
Diez-Perez I, Hihath J, Lee Y, Yu L, Adamska L, Kozhushner M A, Oleynik I I and Tao N 2009 Nat Chem 1 635-641
- [21]
Yee S K, Sun J, Darancet P, Tilley T D, Majumdar A, Neaton J B and Segalman R A 2011 ACS Nano 5 9256-9263
- [22]
Joachim C, Gimzewski J K and Aviram A 2000 Nature 408 541-548
- [23]
Lörtscher E 2013 Nat. Nanotechnol 8 381-384
- [24]
Ratner M 2013 Nat, Nanotechnol 8 378-381
- [25]
Schull G, Frederiksen T, Arnau A, Sanchez-Portal D and Berndt R 2011 Nat. Nanotechnol 6 23-27
- [26] Hohenberg P and Kohn W 1964 Phys. Rev. 136 B864.
- [27] Kohn W and Sham L J 1965 Phys. Rev. 140 A1133
- [28]
Aryasetiawan F and Gunnarsson O 1998 Rep. Prog. Phys. 61 237
- [29]
The GW method has been used to compute electronic excited states at a bcc(110) lithium surface, both bare and covered by ionic ultrathin (1-2 monolayers) LiF epitaxial films. See Sementa L, Marini A, Barcaro G, Negreiros F R and Fortunelli A 2013 Phys. Rev. B 88 125413
- [30] Freysoldt C, Rinke P and Scheffler M 2009 Phys. Rev. Lett. 103 056803
- [31] Godby R W, Schluter M and Sham L J 1986 Phys. Rev. Lett. 56 2415
- [32] Kim Y H and Görling A 2002 Phys. Rev. B 66 035114
- [33] Anisimov V I, Zaanen J and Andersen O K 1991 Phys. Rev. B 44 943
- [34] Cococcioni M and de Gironcoli S 2005 2005 Phys. Rev. B 71 035105
- [35] Korventausta A, Paavilainen S, Niemi E and Nieminen J A 2009 Surf. Sci. 603 437-444
- [36] Scivetti I and Persson M 2013 J. Phys.: Condens. Matter 25 355006
- [37] Scivetti I and Persson M 2014 J. Phys.: Condens. Matter 26 135003.
- [38] Kresse G and Furthmüller J 1996 Comput. Mat. Sci. 6 15-50
- [39] Kresse G and Furthmüller J 1996 Phys. Rev. B 54 11169
- [40] Blöch P E 1994 Phys. Rev. B 50 17953-17979 (1994).
- [41] Kresse G and Joubert D 1999 Phys. Rev. B 59 1758
- [42] Klime J, Bowler D R and Michaelides A 2010 J. Phys.: Condens. Matter 22 022201
- [43] Klime J, Bowler D R and Michaelides A 2011 Phys. Rev. B 83 195131
- [44] Makov G and Payne M C 1995 Phys. Rev. B 51 4014
- [45]
Sato N, Inokuchi H and Silinsh E A 1987 Chem. Phys. 115 269.
- [46] Endres R G, Fong C Y Yang L H, Witte G and Wöll Ch 2004 Comput. Mat. Sci. 29 362-370.
- [47] Mallocia G, Cappellinia G, Mulasb G and Mattonia A 2011 Chem. Phys. 384 19-27.
- [48] The standard deviation for the out-of-plane distances of the atoms in the adsorbed pentacene molecule is less than 0.05 Å.
- [49] The uncertainities in the experimental values are several tenths of an eV due to vibronic shifts [50] and the estimate of the voltage drop across the NaCl film.
- [50] Pavliček N, Swart I, Niedenführ J, Meyer G and Repp J 2013 Phys. Rev. Lett. 110 136101
The reference list from the paper itself. Each links out to its DOI / PubMed record.
- 1[1] Repp J, Meyer G, Olsson F E and Persson M 2004 Science 305 493
- 2[2] Olsson F E, Paavilainen S, Persson M, Repp J and Meyer G 2007 Phys. Rev. Lett. 98 176803
- 3[3] Repp J, Meyer G. Stojković S M, Gourdon A and Joachim C 2005 Phys. Rev. Lett. 94 026803
- 4[4] Repp J, Meyer G, Paavilainen S, Olsson F E and Persson M 2006 Science 312 1196
- 5[5] Mohn F, Repp J, Gross L, Meyer G, Dyer M S and Persson M 2010 Phys. Rev. Letter 105 266102
- 6[6] Steurer W, Gross L and Meyer G. 2014 Appl. Phys. Lett. 104 231606
- 7[7] Schuler B, Meyer G, Pena D, Mullins O C and Gross L 2015 J. Am. Chem. Soc. 137 9870-9876
- 8[8] Pavliček N, Schuler B, Collazos S, Moll N, Perez D, Guitian E, Meyer G, Pena D and Gross L 2015 Nat. Chem. 7 623-628
