In-phase and anti-phase flagellar synchronization by basal coupling
G. S. Klindt, C. Ruloff, C. Wagner, B. M. Friedrich

TL;DR
This paper develops a comprehensive theory of flagellar synchronization in Chlamydomonas, showing how basal coupling and waveform compliance interact to produce in-phase synchronization, with predictions for controlling this process via fluid viscosity and flow.
Contribution
It introduces a full hydrodynamic model that explains how basal coupling and waveform compliance combine to determine flagellar synchronization modes.
Findings
Basal coupling and waveform compliance stabilize anti-phase synchronization individually.
Their nonlinear interaction stabilizes in-phase synchronization as observed experimentally.
Synchronization dynamics can be controlled by changing fluid viscosity or external flow.
Abstract
We present a theory of flagellar synchronization in the green alga Chlamydomonas, using full treatment of flagellar hydrodynamics. We find that two recently proposed synchronization mechanisms, basal coupling and flagellar waveform compliance, stabilize anti-phase synchronization if operative in isolation. Their nonlinear superposition, however, stabilizes in-phase synchronization as observed in experiments. Our theory predicts different synchronization dynamics in fluids of increased viscosity or external flow, suggesting a non-invasive way to control synchronization by hydrodynamic coupling.
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In-phase and anti-phase flagellar synchronization by basal coupling
Gary S. Klindt
Max Planck Institute for the Physics of Complex Systems, 01187 Dresden, Germany
Christian Ruloff
Experimental Physics, Saarland University, 66041 Saarbrücken, Germany
Christian Wagner
Experimental Physics, Saarland University, 66041 Saarbrücken, Germany
Physics and Materials Science Research Unit, University of Luxembourg, 1511 Luxembourg, Luxembourg
Benjamin M. Friedrich
cfaed, TU Dresden, 01062 Dresden, Germany
Abstract
We present a theory of flagellar synchronization in the green alga Chlamydomonas, using full treatment of flagellar hydrodynamics. We find that two recently proposed synchronization mechanisms, basal coupling and flagellar waveform compliance, stabilize anti-phase synchronization if operative in isolation. Their nonlinear superposition, however, stabilizes in-phase synchronization as observed in experiments. Our theory predicts different synchronization dynamics in fluids of increased viscosity or external flow, suggesting a non-invasive way to control synchronization by hydrodynamic coupling.
cilia, flagella, synchronization, hydrodynamic interaction, low Reynolds number
Introduction.
Pairs of coupled oscillators can synchronize with a fixed phase difference, a phenomenon first observed by Huygens for a pair of pendulum clocks Pikovsky et al. (2001). Since then, synchronization has been described for many physical systems, including beating flagella Gray (1928), pairs of heart muscle cells Nitsan et al. (2016), or light-driven micro-mills Kotar et al. (2010). In each of these different systems, the dynamics towards a synchronized state is well approximated by the classic Adler equation for the phase difference between two weakly coupled oscillators Adler (1946); Stratonovich (1963), which reads (for the simplest case of identical intrinsic frequencies and absence of noise)
[TABLE]
The two steady states of Eq. (1), and , characterize in-phase synchronization (IP) and anti-phase synchronization (AP), respectively, see Fig. 1(a,b). The sign of the effective synchronization strength selects which state is stable. Unless the oscillator coupling possesses special symmetries, is generically non-zero Elfring and Lauga (2009); Friedrich (2016). Its sign, however, depends on non-generic features of the system. For example, for a system of two beating metronomes on a moving tray – a modern day analogue of Huygens’ pendulum clocks – both IP and AP synchronization were observed, depending on subtle features like friction with the floor Pantaleone (2002).
At the microscopic scale of biological cells, cilia and flagella represent a prime example of a chemo-mechanical oscillator. Molecular motors inside the flagellum drive regular bending waves of these slender cell appendages Alberts et al. (2002), rendering the flagellar beat a stable limit-cycle oscillator Ma et al. (2014); Wan et al. (2014); Klindt et al. (2016). Pairs of flagella can synchronize their beat, e.g. in the green alga Chlamydomonas that swims with flagella like a breast-stroke swimmer Rüffer and Nultsch (1998); Goldstein et al. (2009); Geyer et al. (2013). IP synchrony of its two flagella is a prerequisite for swimming straight and fast. The basal bodies of the two flagella are connected by a so-called distal striated fiber Ringo (1967). More complex flagellar gaits were observed in species with flagella, with matching patterns of basal coupling Wan and Goldstein (2016). On epithelial surfaces, flagella phase-lock their beat, thus forming metachronal waves Sanderson and Sleigh (1981), which facilitates efficient fluid transport Cartwright et al. (2004); Osterman and Vilfan (2011); Elgeti and Gompper (2013). Flagellar synchronization has been studied intensively in the model organism Chlamydomonas, reporting both IP and AP beating. While wild-type Chlamydomonas cells usually display IP synchrony, stochastic switching between regimes of stable IP and AP beating has been observed in a flagellar mutant (ptx1) Leptos et al. (2013). Another mutant (vfl) with impaired basal coupling displayed lack of coordinated flagellar beating altogether Quaranta et al. (2015); Wan and Goldstein (2016).
A long-standing hypothesis states that flagellar synchronization arises from a hydrodynamic coupling between flagella Taylor (1951), as demonstrated for pairs of flagellated cells held at a distance Brumley et al. (2014). A popular minimal model of this phenomenon abstracts from the specific shape of flagellar bending waves and represents each flagellum by a sphere moving along a circular orbit Vilfan and Jülicher (2006); Niedermayer et al. (2008); Uchida and Golestanian (2011); Friedrich and Jülicher (2012); Bennett and Golestanian (2013); Polotzek and Friedrich (2013); Izumida et al. (2016). The motion of the left and the right sphere with respective phase angles and is described by a balance of forces between active driving forces and hydrodynamic friction forces
[TABLE]
Specifically, is the hydrodynamic friction force acting on the left sphere due to its own motion, and represents direct hydrodynamic interactions exerted by the right sphere on the left one. The minimal model possesses parity-time symmetry (PT), characterized by , i.e. a spatial parity transformation () gives rise to an equivalent dynamics, but with time-arrow reversed Elfring and Lauga (2009); Elgeti et al. (2015); Friedrich (2016). Thus, there can be neither stable nor unstable states, unless PT-symmetry is broken.
A number of different PT-symmetry breaking effects have been proposed in the past, including interaction with boundary walls Vilfan and Jülicher (2006), phase-dependent driving forces Uchida and Golestanian (2011), and amplitude compliance with a variable radius of each circular orbit, constrained by an elastic spring Niedermayer et al. (2008); Reichert and Stark (2005). In addition to direct hydrodynamic interactions between the two flagella, synchronization independent of hydrodynamic interactions can occur by a coupling between flagellar beating and the resultant motion of the cell Friedrich and Jülicher (2012). Importantly, two recent experimental studies suggest that in Chlamydomonas, an elastic basal coupling connecting the proximal ends of both flagella could play a key role for flagellar synchronization Quaranta et al. (2015); Wan and Goldstein (2016). While each of these proposed mechanisms could in principle account for synchronization, it is not known, which symmetry breaking mechanism dominates in the real biological system. A priori, we do not even know if a specific mechanism will stabilize the IP or AP synchronized state.
Here, we theoretically study flagellar synchronization in the model organism Chlamydomonas to predict conditions for IP and AP synchrony, and present a first experiment to test our theory. We build on a previously developed description of the beating flagellum as a limit-cycle oscillator Klindt et al. (2016). There, we retain the picture of a point moving along a circular orbit, yet each position of this point represents a genuine flagellar shape, see Fig. 1(c). Our theory uses detailed hydrodynamic calculations based on experimental beat patterns, to elucidate two PT-symmetry breaking effects: flagellar waveform compliance, and basal coupling between both flagella. We find that both PT-symmetry breaking mechanisms have a strong impact on synchronization, but only their combination yields IP synchrony with a synchronization strength sufficient to overcome noise Goldstein et al. (2009); Ma et al. (2014).
Effective theory of flagellar swimming and synchronization.
Recently, we introduced an effective theory of flagellar swimming Klindt et al. (2016), there formulated for the case of synchronized beating only. The main idea behind this theory is that regular flagellar bending waves represent a limit-cycle oscillator, which can be generically parametrized by a -periodic phase variable obeying in the absence of an external perturbation, as well as a normalized amplitude , which will always relax to a steady-state value . Any deviation from the reference condition, e.g. for asynchronous beating, external flow, or altered viscosity of the surrounding fluid, changes or . We can thus describe the motion of a Chlamydomonas cell in a plane by a state vector comprising seven degrees of freedom, see Fig. 1(d)
[TABLE]
Here, , with denote phase and amplitude of the left and right flagellum, respectively, while , , , denote orientation angle and center position of the cell body.
Each change of a degree of freedom will set the surrounding fluid in motion and induce hydrodynamic dissipation, in addition to friction inside the flagella. The total dissipation rate can be expressed in terms of generalized velocities and conjugated generalized friction forces
[TABLE]
The definition of the generalized friction forces follows the framework of Lagrangian mechanics for dissipative systems, using as Rayleigh dissipation function Goldstein et al. (2002); Polotzek and Friedrich (2013). In the limit of zero Reynolds number, applicable to cellular self-propulsion where inertia is negligible Lauga and Powers (2009), hydrodynamic friction forces are linear in the generalized velocities , (Einstein summation convention). The total friction forces additionally comprise intraflagellar friction forces . For simplicity, we assume with coefficients proportional to the respective hydrodynamic friction coefficients, i.e. for either or and else, where denotes an energy efficiency of the flagellar beat.
We coarse-grain the activity of molecular motors inside each flagellum by active flagellar driving forces and amplitude restoring forces , . Thus, at each instance in time, we have 7 force balance equations
[TABLE]
Here, the generalized forces , , and represent constraining forces that ensure constraints of motion imposed on the cell. For a freely-swimming cell, force and torque balance imply , . For a fully clamped cell, one would impose , , , and determine the constraining forces , , such that the constraints are satisfied. With this calibration, Eq. (5) fully specify equations of motions of flagellar swimming and synchronization.
Hydrodynamic computations allow us to determine all hydrodynamic friction coefficients for a given flagellar beat pattern. Here, we use a fast boundary element method as described in Klindt and Friedrich (2015) and a flagellar beat pattern recorded for the reference condition of a clamped cell with IP-synchronized beat Klindt et al. (2016). There, the efficiency parameter has been estimated as Klindt et al. (2016). Additionally, the flagellar driving forces were uniquely calibrated from the requirement and for the reference case. The amplitude restoring forces determine how fast amplitude perturbations decay. Here, we assume exponential relaxation with a single relaxation time-scale for the reference condition, which uniquely determines Klindt et al. (2016). For , perturbations cannot change the amplitude, while for the limit cycle may become unstable. An analysis of amplitude fluctuations of the flagellar beat provided an estimate Ma et al. (2014). We now use this theoretical description to predict dynamics after a perturbation of perfect synchrony for different PT-symmetry breaking scenarios.
Flagellar waveform compliance.
Elastic degrees of freedom such as a flagellar waveform compliance can break PT symmetry in minimal models of hydrodynamically coupled oscillators, and thus allow for synchronization Niedermayer et al. (2008). We tested this general proposition for the specific case of flagellar synchronization in Chlamydomonas, using our theoretical description with amplitude degrees of freedom and . We quantify the stability of the IP-synchronized state in terms of an effective synchronization strength , generalizing the parameter in Eq. (1), such that equals the cycle-average Ljapunov exponent for the phase difference . The sign of indicates whether IP synchrony is stable () or not ().
We computed for both the case of free-swimming and of clamped cells for two waveform data sets, see Fig. 2 and Fig. S4 in SM for (no basal coupling). Whether a cell can swim freely, or is restrained from moving, can make a substantial difference for flagellar synchronization Geyer et al. (2013). In the absence of flagellar waveform compliance () and basal coupling (), we find for a free-swimming cell, and for a clamped cell, similar to a previous study Geyer et al. (2013) 11endnote: 1 There, , implying , see Fig. S5 in SM. . Amplitude compliance () changes the synchronization strength, yet, surprisingly, destabilizes IP synchrony for free-swimming cells. Next, we study how an elastic basal coupling affects flagellar synchronization.
Basal body coupling.
In Chlamydomonas, the proximal ends of both flagella are connected by a distal striated fiber, comprising an elastic basal coupling Ringo (1967). Previous experimental studies indicate the importance of this basal link for flagellar synchronization Quaranta et al. (2015); Wan and Goldstein (2016). In the following, we account for a finite elastic stiffness of this basal link, for which we assume a Hookian elastic energy
[TABLE]
Here, represent the elongation of the basal link, which is a periodic function of the two flagellar phases. In the absence of detailed knowledge of the elastic properties of the basal apparatus, we make the generic Ansatz with some phase shift . The elastic energy of the basal link results in an additional term in the active flagellar driving force
[TABLE]
and similarly for , , . Here, the last term merely reflects the fact that the elastic basal coupling must be incorporated in the calibration of the flagellar driving forces to yield in the reference case of IP-synchronized beating. Note that the unknown phase shift affects synchronization, see Fig. 2(c).
Fig. 2(a,b) shows numerical results for the synchronization strength as a function of basal stiffness for both clamped and free-swimming cells. Remarkably, basal coupling destabilizes IP synchrony in the absence of amplitude compliance, but stabilizes it for realistic values of the amplitude relaxation time and suitable choice of . Thus, the combined effect of two PT-symmetry breaking mechanisms is opposite to the sum of their individual effects. A basal stiffness of reproduces a previously measured value of for clamped cells Goldstein et al. (2009). With the length and cross-sectional area of the distal striated fiber Ringo (1967), and assuming , our estimate for corresponds to a Young’s modulus of approximately , well in the range of biological materials.
Out-of-phase synchronization.
Flagellar synchronization by basal coupling exhibits dynamics that is more complex then the Adler equation. While we find stable AP and IP synchronization for sufficiently weak and strong basal coupling, respectively, consistent with Eq. (1), we find a regime of out-of-phase (OP) synchronization with for intermediate coupling strengths, emerging from the IP-synchronized state by a pitchfork bifurcation, see Fig. 2(d). This OP synchronization represents an instance of spontaneous symmetry-breaking with two stable solutions .
Suggestions for experiments.
Our theory suggests a non-invasive way to control flagellar synchronization. We predict that for external flow parallel to the long axis of a Chlamydomonas cell, the synchronization strength is reduced, see Fig. 3(a). Increasing the viscosity of the surrounding fluid gives similar results, see Fig. S6 in the Supporting Material (SM). Conceptually, imposing an external flow is equivalent to changing the phase-dependence of the flagellar driving forces, while increasing the viscosity reduces the magnitude of elastic coupling relative to viscous coupling.
We performed experiments, exposing Chlamydomonas cells held in micropipettes to external flow. We determined a flow-dependent synchronization strength , normalized by an effective noise strength of flagellar beating, see Fig. 3(b) and SM for details. Independent measurements reported Goldstein et al. (2011); Ma et al. (2014). This suggests a quantitative match of theory and experiment.
Minimal model of synchronization by basal coupling.
To gain insight into basic mechanisms of IP and AP synchronization, we revisit a popular minimal model of hydrodynamic synchronization Vilfan and Jülicher (2006); Niedermayer et al. (2008); Uchida and Golestanian (2011). Two spheres of equal radius move inside a viscous fluid of viscosity along circular orbits of respective radii , with centers separated by a distance , , for . Here, denotes the radial vector and , . Each sphere is driven by a constant tangential driving force with , friction coefficient and reference amplitude . Hydrodynamic interactions couple the motion of both spheres. In the limit with of order unity, , and vice versa. Here, is the tangent vector and denotes the Oseen tensor. For constant amplitude, , the system possesses PT-symmetry and no net synchronization occurs Vilfan and Jülicher (2006); Elfring and Lauga (2009); Friedrich (2016). Introducing amplitude compliance, with amplitude stiffness for the left sphere and similarly for the right sphere, breaks PT-symmetry and results in , where denotes an amplitude relaxation time, see SM for details. Note that we consider counter-rotating spheres, mimicking a clamped Chlamydomonas cell Friedrich and Jülicher (2012); Bennett and Golestanian (2013), while the originally studied case of co-rotating spheres yields Niedermayer et al. (2008). Analogous to Eq. (7), we can introduce ‘basal coupling’ in this two-sphere model [with ] as a second PT-symmetry breaking mechanism. This yields a synchronization strength in the absence of amplitude compliance with . Thus, both mechanism imply for if operative in isolation. Their nonlinear superposition, however, results in a positive cross-coupling term
[TABLE]
As a consequence, IP synchrony is stable for suitable and .
Discussion.
Here, we presented a theory of flagellar swimming and synchronization for the model organism Chlamydomonas, to dissect the role of two proposed synchronization mechanism, flagellar waveform compliance Niedermayer et al. (2008) and elastic basal coupling Quaranta et al. (2015); Wan and Goldstein (2016). We find that each mechanism separately stabilized anti-phase synchronization in free-swimming cells, but their combination results in in-phase synchronization, as observed in experiments Rüffer and Nultsch (1998); Goldstein et al. (2009).
Our theory makes specific predictions that can be tested in experiments. This includes altered synchronization dynamics in the presence of external flow or fluids of increased viscosity. Further, experimental disruption of the distal striated fiber that link the basal bodies of the two flagella, e.g. by laser ablation, could validate the role of basal coupling for synchronization proposed here. Interestingly, a change in length of the distal striated fiber, e.g. induced by intracellular calcium signaling Salisbury and Floyd (1978), could allow the cell to switch between IP and AP synchronization (see Fig. S7 in SM), causing a ‘run-and-tumble’ motion as observed previously Polin et al. (2009). In conclusion, we have shown that synchronization strengths measured in experiments Goldstein et al. (2009) cannot be explained in our theory without basal coupling, yet are reproduced for plausible parameter choices assuming such coupling.
Acknowledgment.
G.S.K. and B.M.F. acknowledge support from the German Science Foundation “Microswimmers” Priority Program 1726 (Grant No. FR 3429/1-1).
The reference list from the paper itself. Each links out to its DOI / PubMed record.
- 1Pikovsky et al. (2001) A. Pikovsky, M. Rosenblum, and J. Kurths, Synchronization (Cambridge UP, 2001).
- 2Gray (1928) J. Gray, Ciliary Movements (Cambridge Univ. Press, Cambridge, 1928).
- 3Nitsan et al. (2016) I. Nitsan, S. Drori, Y. E. Lewis, S. Cohen, and S. Tzlil, Nat. Phys. (2016).
- 4Kotar et al. (2010) J. Kotar, M. Leoni, B. Bassetti, M. C. Lagomarsino, and P. Cicuta, Proc. Natl. Acad. Sci. U.S.A. 107 , 7669 (2010).
- 5Adler (1946) R. Adler, Proc. IRE 34 , 351 (1946).
- 6Stratonovich (1963) R. L. Stratonovich, Topics in the Theory of Random Noise (Gordon & Breach, 1963).
- 7Elfring and Lauga (2009) G. J. Elfring and E. Lauga, Phys. Rev. Lett. 103 , 088101 (2009).
- 8Friedrich (2016) B. M. Friedrich, Eur. Phys. J. Spec. Top. 225 , 2353 (2016).
