TL;DR
This paper introduces an efficient numerical method for simulating many-body Brownian dynamics of active colloidal rollers near a wall, revealing how thermal fluctuations influence instability development.
Contribution
The authors develop a stochastic Adams-Bashforth integrator with a Krylov method for Brownian dynamics, improving accuracy and efficiency over existing schemes for confined active suspensions.
Findings
Thermal fluctuations determine the colloids' height above the wall.
The characteristic height influences the fingering instability's timescale and wavelength.
The new numerical method maintains efficiency regardless of particle number.
Abstract
We develop efficient numerical methods for performing many-body Brownian dynamics simulations of a recently-observed fingering instability in an active suspension of colloidal rollers sedimented above a wall [M. Driscoll, B. Delmotte, M. Youssef, S. Sacanna, A. Donev and P. Chaikin, Nature Physics, 2016, doi:10.1038/nphys3970]. We present a stochastic Adams-Bashforth integrator for the equations of Brownian dynamics, which has the same cost as but is more accurate than the widely-used Euler-Maruyama scheme, and uses a random finite difference to capture the stochastic drift proportional to the divergence of the configuration-dependent mobility matrix. We generate the Brownian increments using a Krylov method, and show that for particles confined to remain in the vicinity of a no-slip wall by gravity or active flows the number of iterations is independent of the number of particles. Our…
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