Longest Common Subsequence in at Least $k$ Length Order-Isomorphic Substrings
Yohei Ueki, Diptarama, Masatoshi Kurihara, Yoshiaki Matsuoka, Kazuyuki, Narisawa, Ryo Yoshinaka, Hideo Bannai, Shunsuke Inenaga, Ayumi Shinohara

TL;DR
This paper introduces an efficient $O(mn)$ time algorithm for the longest common subsequence problem with at least $k$ length order-isomorphic substrings, improving upon existing methods and providing practical solutions.
Contribution
The paper presents the first $O(mn)$ time algorithms for LCS with at least $k$ length order-isomorphic substrings, enhancing computational efficiency.
Findings
Achieved $O(mn)$ worst-case time complexity for the problem.
Provided an easy-to-implement algorithm for the order-isomorphic substrings variant.
Improved upon previous algorithms with higher worst-case running times.
Abstract
We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least length substrings. First, we show an time algorithm for the problem which gives a better worst-case running time than existing algorithms, where and are lengths of the input strings. Furthermore, we mainly consider the LCS in at least length order-isomorphic substrings problem. We show that the problem can also be solved in worst-case time by an easy-to-implement algorithm.
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Taxonomy
TopicsAlgorithms and Data Compression · Genomics and Phylogenetic Studies · Network Packet Processing and Optimization
