Jansen-MIDAS: a multi-level photomicrograph segmentation software based on isotropic undecimated wavelets

TL;DR

Jansen-MIDAS is an open-source software tool that provides multi-level segmentation of photomicrographs using wavelet-based methods, enhancing accuracy and usability for scientists analyzing microscopic images.

Contribution

It introduces Jansen-MIDAS, a novel software implementing MLSS and MLSOS methods for improved photomicrograph segmentation in both command-line and GUI formats.

Findings

Effective multi-level segmentation of photomicrographs

Open-source software available for GNU Octave and MATLAB

Reliable alternative for scientific image analysis

Abstract

Image segmentation, the process of separating the elements within an image, is frequently used for obtaining information from photomicrographs. However, segmentation methods should be used with reservations: incorrect segmentation can mislead when interpreting regions of interest (ROI), thus decreasing the success rate of additional procedures. Multi-Level Starlet Segmentation (MLSS) and Multi-Level Starlet Optimal Segmentation (MLSOS) were developed to address the photomicrograph segmentation deficiency on general tools. These methods gave rise to Jansen-MIDAS, an open-source software which a scientist can use to obtain a multi-level threshold segmentation of his/hers photomicrographs. This software is presented in two versions: a text-based version, for GNU Octave, and a graphical user interface (GUI) version, for MathWorks MATLAB. It can be used to process several types of images, becoming a reliable alternative to the scientist.