Two-color spectroscopy of UV excited ssDNA complex with a single-wall nanotube probe: Fast nucleobase autoionization mechanism

TL;DR

This study uses two-color spectroscopy with carbon nanotubes to investigate the rapid autoionization process of UV-excited DNA, revealing a 20 femtosecond charge transfer mechanism and offering a new method to monitor DNA damage.

Contribution

It introduces a novel spectroscopic approach combining experimental and theoretical methods to measure DNA autoionization rates using nanotube probes.

Findings

DNA autoionization occurs in about 20 fs via hole transfer.

SWNT photoluminescence quenching indicates charge transfer from DNA.

The method enables monitoring DNA excitation and damage in vivo and in vitro.

Abstract

DNA autoionization is a fundamental process wherein UV-photoexcited nucleobases dissipate energy by charge transfer to the environment without undergoing chemical damage. Here, single-wall carbon nanotubes (SWNT) are explored as a photoluminescent reporter for studying the mechanism and rates of DNA autoionization. Two-color photoluminescence spectroscopy allows separate photoexcitation of the DNA and the SWNTs in the UV and visible range, respectively. A strong SWNT photoluminescence quenching is observed when the UV pump is resonant with the DNA absorption, consistent with charge transfer from the excited states of the DNA to the SWNT. Semiempirical calculations of the DNA-SWNT electronic structure, combined with a Green's function theory for charge transfer, show a 20 fs autoionization rate, dominated by the hole transfer. Rate-equation analysis of the spectroscopy data confirms that the quenching rate is limited by the thermalization of the free charge carriers transferred to the nanotube reservoir. The developed approach has a great potential for monitoring DNA excitation, autoionization, and chemical damage both {\it in vivo} and {\it in vitro}.