Virtualizing Lifemapper Software Infrastructure for Biodiversity Expedition

TL;DR

This paper discusses the virtualization of Lifemapper software to create a flexible, reproducible, and portable infrastructure for biodiversity data analysis, enabling deployment across various system configurations including laptops.

Contribution

It presents a practical framework for virtualizing a complex, domain-specific system to enhance deployment flexibility and reproducibility in biodiversity research.

Findings

Successful virtualization of Lifemapper on multiple system configurations

Enhanced deployment speed and flexibility for biodiversity data analysis

Portability from clusters to single laptops

Abstract

One of the activities of the Pacific Rim Applications and Grid Middleware Assembly (PRAGMA) is fostering Virtual Biodiversity Expeditions (VBEs) by bringing domain scientists and cyber infrastructure specialists together as a team. Over the past few years PRAGMA members have been collaborating on virtualizing the Lifemapper software. Virtualization and cloud computing have introduced great flexibility and efficiency into IT projects. Virtualization provides application scalability, maximizes resources utilization, and creates a more efficient, agile, and automated infrastructure. However, there are downsides to the complexity inherent in these environments, including the need for special techniques to deploy cluster hosts, dependence on virtual environments, and challenging application installation, management, and configuration. In this paper, we report on progress of the Lifemapper virtualization framework focused on a reproducible and highly configurable infrastructure capable of fast deployment. A key contribution of this work is describing the practical experience in taking a complex, clustered, domain-specific, data analysis and simulation system and making it available to operate on a variety of system configurations. Uses of this portability range from whole cluster replication to teaching and experimentation on a single laptop. System virtualization is used to practically define and make portable the full application stack, including all of its complex set of supporting software.