Current-voltage characteristics of seven-helix proteins from a cubic array of amino acids

TL;DR

This study models the electrical properties of seven-helix transmembrane proteins using cubic amino acid arrays, showing good agreement with experimental data and revealing common voltage-dependent conductance behaviors.

Contribution

It introduces a simplified cubic array model to predict protein I-V characteristics, reducing reliance on detailed 3D structural data.

Findings

Good agreement between cubic array predictions and experimental I-V data

Proteins exhibit similar critical voltage-dependent conductance behavior

High-voltage conductance plateau observed in all proteins

Abstract

The electrical properties of a set of seven-helix transmembrane proteins, whose space arrangement (3D structure) is known, are investigated by using regular arrays of the amino acids. These structures, specifically cubes, have topological features similar to those shown by the chosen proteins. The theoretical results show a good agreement between the predicted current-voltage characteristics obtained from a cubic array and those obtained from a detailed 3D structure. The agreement is confirmed by available experiments on bacteriorhodopsin. Furthermore, all the analyzed proteins are found to share the same critical behaviour of the voltage-dependent conductance and of its variance. In particular, the cubic arrangement evidences a short plateau of the excess conductance and its variance at high voltages. The results of the present investigation show the possibility to predict the I-V characteristics of multiple-protein sample even in the absence of a detailed knowledge of their 3D structure.