A possible role for stochastic radiation events in the systematic disparity between molecular and fossil dates
Adrian L. Melott (University of Kansas)

TL;DR
This paper proposes that stochastic astrophysical radiation events, like supernovae, could cause variability in molecular clock rates, explaining discrepancies between fossil and molecular divergence dates, especially in certain taxa and time periods.
Contribution
It introduces a novel hypothesis linking astrophysical radiation to molecular clock variability and suggests specific tests to validate this connection.
Findings
Disparity is larger for mitochondrial DNA than nuclear DNA.
Disparity is greater for crown fossil dates than stem fossil dates.
Potential acceleration of molecular clocks around 2-2.5 million years ago due to supernovae.
Abstract
Major discrepancies have been noted for some time between fossil ages and molecular divergence dates for a variety of taxa. Recently, systematic trends within avian clades have been uncovered. The trends show that the disparity is much larger for mitochondrial DNA than for nuclear DNA, also that it is larger for crown fossil dates than stem fossil dates. It has been argued that this pattern is largely inconsistent with incompleteness of the fossil record as the principal driver of the disparity. A case is presented that given the expected mutations from a fluctuating background of astrophysical radiation from such sources as supernovae, the rate of molecular clocks is variable and should increase back to a few Ma, before returning to the long-term average rate. This is a possible explanation for the disparity. One test of this hypothesis is to look for an acceleration of molecular…
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