Point Localization and Density Estimation from Ordinal kNN graphs using Synchronization
Mihai Cucuringu, Joseph Woodworth

TL;DR
This paper introduces a scalable method for embedding unweighted k-nearest neighbor graphs in low-dimensional space using ordinal information and synchronization techniques, also enabling robust density estimation.
Contribution
It proposes a novel local-to-global synchronization approach with scaling for embedding and density recovery from ordinal kNN graphs, improving scalability and robustness.
Findings
Effective embedding of large graphs demonstrated
Robust density estimation via TV-MPLE shown to be feasible
Comparison with LOE highlights advantages in scalability
Abstract
We consider the problem of embedding unweighted, directed k-nearest neighbor graphs in low-dimensional Euclidean space. The k-nearest neighbors of each vertex provides ordinal information on the distances between points, but not the distances themselves. We use this ordinal information along with the low-dimensionality to recover the coordinates of the points up to arbitrary similarity transformations (rigid transformations and scaling). Furthermore, we also illustrate the possibility of robustly recovering the underlying density via the Total Variation Maximum Penalized Likelihood Estimation (TV-MPLE) method. We make existing approaches scalable by using an instance of a local-to-global algorithm based on group synchronization, recently proposed in the literature in the context of sensor network localization and structural biology, which we augment with a scaling synchronization step.…
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Taxonomy
TopicsAdvanced Fluorescence Microscopy Techniques · Gene Regulatory Network Analysis · Advanced Optical Sensing Technologies
