Time-Resolved Emission Study of a Thiophene-Modified Fluorescent Nucleoside in Solution and within Multiply-Modified Oligodeoxynucleotides

TL;DR

This study investigates the photophysical properties of a thiophene-modified fluorescent nucleoside, revealing how its emission lifetime varies with solvent viscosity and nucleotide incorporation, using steady-state and time-resolved emission techniques.

Contribution

It introduces a detailed analysis of the emission behavior of a novel fluorescent nucleoside in solution and within modified DNA, including a non-radiative decay model considering molecular twist.

Findings

Emission lifetime depends on solvent viscosity and temperature.

Incorporation into DNA increases emission lifetime and causes non-exponential decay.

A non-radiative decay model based on the thiophene twist angle fits the data.

Abstract

Steady-state and time-resolved emission techniques were employed to study the photophysical properties of 5-(thien-2-yl)-2'-deoxyuridine (dUTh), an isomorphic fluorescent nucleoside analog. We found that the emission lifetime of dUTh is dependent upon the solvent viscosity and obeys the F\"orster-Hoffman relation over a wide range of temperatures in 1-propanol, a glass-forming liquid. Upon incorporation into oligodeoxynucleotides, the average emission lifetime significantly increases, and the decay is non-exponential. We use a non-radiative decay model that takes into account the twist angle of the thiophene ring to fit the time-resolved emission decay curves.