Estimating Abundance from Counts in Large Data Sets of Irregularly-Spaced Plots using Spatial Basis Functions

TL;DR

This paper presents a fast, spatial basis function-based method for estimating total counts of plant and animal populations from irregularly-spaced plot data, accounting for spatial variability and overdispersion.

Contribution

It introduces a novel approach using spatial basis functions and change-of-support methods for efficient population abundance estimation from irregular spatial data.

Findings

Method is computationally fast, taking only seconds for thousands of images.

Introduces new overdispersion estimators for better variance estimation.

Demonstrates effectiveness with simulated data and real harbor seal counts.

Abstract

Monitoring plant and animal populations is an important goal for both academic research and management of natural resources. Successful management of populations often depends on obtaining estimates of their mean or total over a region. The basic problem considered in this paper is the estimation of a total from a sample of plots containing count data, but the plot placements are spatially irregular and non randomized. Our application had counts from thousands of irregularly-spaced aerial photo images. We used change-of-support methods to model counts in images as a realization of an inhomogeneous Poisson process that used spatial basis functions to model the spatial intensity surface. The method was very fast and took only a few seconds for thousands of images. The fitted intensity surface was integrated to provide an estimate from all unsampled areas, which is added to the observed counts. The proposed method also provides a finite area correction factor to variance estimation. The intensity surface from an inhomogeneous Poisson process tends to be too smooth for locally clustered points, typical of animal distributions, so we introduce several new overdispersion estimators due to poor performance of the classic one. We used simulated data to examine estimation bias and to investigate several variance estimators with overdispersion. A real example is given of harbor seal counts from aerial surveys in an Alaskan glacial fjord.