Signalling Entropy: a novel network-theoretical framework for systems analysis and interpretation of functional omic data

TL;DR

This paper introduces signalling entropy, a new network-theoretical framework based on statistical mechanics, to analyze omic data and understand cellular systems, differentiation, and disease mechanisms like cancer.

Contribution

It proposes signalling entropy as a novel measure for systems biology analysis, linking it to cellular differentiation, cancer status, and drug resistance, grounded in statistical mechanical principles.

Findings

Signalling entropy discriminates cell differentiation and cancer states.

High signalling entropy correlates with drug resistance in cancer cells.

Entropy can identify vulnerabilities in cancer cells for targeted therapy.

Abstract

A key challenge in systems biology is the elucidation of the underlying principles, or fundamental laws, which determine the cellular phenotype. Understanding how these fundamental principles are altered in diseases like cancer is important for translating basic scientific knowledge into clinical advances. While significant progress is being made, with the identification of novel drug targets and treatments by means of systems biological methods, our fundamental systems level understanding of why certain treatments succeed and others fail is still lacking. We here advocate a novel methodological framework for systems analysis and interpretation of molecular omic data, which is based on statistical mechanical principles. Specifically, we propose the notion of cellular signalling entropy (or uncertainty), as a novel means of analysing and interpreting omic data, and more fundamentally, as a means of elucidating systems-level principles underlying basic biology and disease. We describe the power of signalling entropy to discriminate cells according to differentiation potential and cancer status. We further argue the case for an empirical cellular entropy-robustness correlation theorem and demonstrate its existence in cancer cell line drug sensitivity data. Specifically, we find that high signalling entropy correlates with drug resistance and further describe how entropy could be used to identify the achilles heels of cancer cells. In summary, signalling entropy is a deep and powerful concept, based on rigorous statistical mechanical principles, which, with improved data quality and coverage, will allow a much deeper understanding of the systems biological principles underlying normal and disease physiology.