Efficient hierarchical analysis of the stability of a network through dimensional reduction of its influence topology
Ali Kinkhabwala (Max Planck Institute of Molecular Physiology)

TL;DR
This paper introduces a hierarchical, dimension-reducing method for analyzing network stability based on influence topology, enabling efficient stability testing across various scientific fields.
Contribution
It presents a novel hierarchical approach that simplifies stability analysis by focusing on influence topology and algebraic conditions, improving efficiency over traditional methods.
Findings
Influence topology can be represented as a signed bipartite graph.
Dimensional reduction techniques enable efficient stability analysis.
Hierarchical dependence of stability on topology and algebraic conditions is demonstrated.
Abstract
The connection between network topology and stability remains unclear. General approaches that clarify this relationship and allow for more efficient stability analysis would be desirable. Inspired by chemical reaction networks, I demonstrate the utility of expressing the governing equations of arbitrary first-order dynamical systems (interaction networks) in terms of sums of real functions (generalized reactions) multiplied by real scalars (generalized stoichiometries). Specifically, I examine the mathematical notion of influence topology, which is based on the reaction stoichiometries and the first derivatives of the reactions with respect to each species at the steady state solution(s). It is naturally represented as a signed directed bipartite graph with arrows or blunt arrows connecting a species node to a reaction node (positive/negative derivative) or a reaction node to a species…
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Taxonomy
TopicsGene Regulatory Network Analysis · Nonlinear Dynamics and Pattern Formation · Protein Structure and Dynamics
