GROTESQUE: Noisy Group Testing (Quick and Efficient)

TL;DR

This paper introduces new algorithms for noisy group testing that are order-optimal in the number of tests and decoding complexity across adaptive and non-adaptive scenarios, with low error probability.

Contribution

It presents the first schemes that are simultaneously near-optimal in tests and decoding complexity for noisy group testing, including adaptive and non-adaptive methods with few stages.

Findings

Order-optimal adaptive algorithm with $ ext{O}(D ext{log}(N))$ tests and decoding complexity.

Near-optimal non-adaptive scheme with $ ext{O}(D ext{log}(D) ext{log}(N))$ tests.

Two-stage adaptive algorithm with $ ext{O}(D( ext{log} N+ ext{log}^2 D))$ tests and complexity.

Abstract

Group-testing refers to the problem of identifying (with high probability) a (small) subset of $D$ defectives from a (large) set of $N$ items via a "small" number of "pooled" tests. For ease of presentation in this work we focus on the regime when $D = \cO{N^{1-\gap}}$ for some $\gap > 0$. The tests may be noiseless or noisy, and the testing procedure may be adaptive (the pool defining a test may depend on the outcome of a previous test), or non-adaptive (each test is performed independent of the outcome of other tests). A rich body of literature demonstrates that $\Theta(D\log(N))$ tests are information-theoretically necessary and sufficient for the group-testing problem, and provides algorithms that achieve this performance. However, it is only recently that reconstruction algorithms with computational complexity that is sub-linear in $N$ have started being investigated (recent work by \cite{GurI:04,IndN:10, NgoP:11} gave some of the first such algorithms). In the scenario with adaptive tests with noisy outcomes, we present the first scheme that is simultaneously order-optimal (up to small constant factors) in both the number of tests and the decoding complexity ($\cO{D\log(N)}$ in both the performance metrics). The total number of stages of our adaptive algorithm is "small" ($\cO{\log(D)}$). Similarly, in the scenario with non-adaptive tests with noisy outcomes, we present the first scheme that is simultaneously near-optimal in both the number of tests and the decoding complexity (via an algorithm that requires $\cO{D\log(D)\log(N)}$ tests and has a decoding complexity of {${\cal O}(D(\log N+\log^{2}D))$}. Finally, we present an adaptive algorithm that only requires 2 stages, and for which both the number of tests and the decoding complexity scale as {${\cal O}(D(\log N+\log^{2}D))$}. For all three settings the probability of error of our algorithms scales as $\cO{1/(poly(D)}$.