Single versus double bond breakage in a Morse chain under tension: higher index saddles and bond healing
F. A. L. Mauguiere, P. Collins, G. S. Ezra, S. Wiggins

TL;DR
This paper analyzes the fragmentation dynamics of a tensile-stressed atomic chain, emphasizing the role of higher index saddles, especially index 2, in bond breakage and healing phenomena, using phase space analysis and trajectory simulations.
Contribution
It introduces a phase space framework with dividing surfaces for classifying trajectories near higher index saddles, and demonstrates bond healing in a tensile chain.
Findings
Index 2 saddle governs dynamics in a 2-particle chain.
Trajectories can exhibit bond healing before dissociation.
Normal form theory aids in classifying phase space trajectories.
Abstract
We investigate the fragmentation dynamics of an atomic chain under tensile stress. We have classified the location, stability type (indices) and energy of all equilibria for the general -particle chain, and have highlighted the importance of saddle points with index . We show that for an -particle chain under tensile stress the index 2 saddle plays a central role in organizing the dynamics. We apply normal form theory to analyze phase space structure and dynamics in a neighborhood of the index 2 saddle. We define a phase dividing surface (DS) that enables us to classify trajectories passing through a neighborhood of the saddle point using the values of the integrals associated with the normal form. We also generalize our definition of the dividing surface and define an \emph{extended dividing surface} (EDS), which is used to sample and classify all trajectories that pass…
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Taxonomy
TopicsProtein Structure and Dynamics · Material Dynamics and Properties · Theoretical and Computational Physics
