A blind deconvolution approach to recover effective connectivity brain networks from resting state fMRI data

TL;DR

This paper introduces a novel blind deconvolution method for resting state fMRI data to improve effective connectivity analysis by addressing hemodynamic confounds and computational challenges.

Contribution

It proposes a simple, novel blind deconvolution technique combined with partial conditioning to better infer brain networks from resting state fMRI.

Findings

Deconvolved BOLD signals reveal clearer effective connectivity networks.

Partial conditioning reduces overfitting in multivariate analysis.

Comparison shows differences between raw and deconvolved effective networks.

Abstract

A great improvement to the insight on brain function that we can get from fMRI data can come from effective connectivity analysis, in which the flow of information between even remote brain regions is inferred by the parameters of a predictive dynamical model. As opposed to biologically inspired models, some techniques as Granger causality (GC) are purely data-driven and rely on statistical prediction and temporal precedence. While powerful and widely applicable, this approach could suffer from two main limitations when applied to BOLD fMRI data: confounding effect of hemodynamic response function (HRF) and conditioning to a large number of variables in presence of short time series. For task-related fMRI, neural population dynamics can be captured by modeling signal dynamics with explicit exogenous inputs; for resting-state fMRI on the other hand, the absence of explicit inputs makes this task more difficult, unless relying on some specific prior physiological hypothesis. In order to overcome these issues and to allow a more general approach, here we present a simple and novel blind-deconvolution technique for BOLD-fMRI signal. Coming to the second limitation, a fully multivariate conditioning with short and noisy data leads to computational problems due to overfitting. Furthermore, conceptual issues arise in presence of redundancy. We thus apply partial conditioning to a limited subset of variables in the framework of information theory, as recently proposed. Mixing these two improvements we compare the differences between BOLD and deconvolved BOLD level effective networks and draw some conclusions.