Optimizing working parameters of the twin-range cutoff method in terms of accuracy and efficiency
Han Wang, Pingwen Zhang

TL;DR
This paper introduces an error estimation and an automatic parameter tuning workflow for the twin-range cutoff method in molecular simulations, optimizing accuracy and efficiency.
Contribution
It provides a novel a priori error estimate and an automated method to select optimal cutoff parameters for the twin-range cutoff technique.
Findings
The error estimation accurately predicts force errors.
The parameter tuning improves simulation efficiency.
The method is validated across different states of Lennard-Jones fluid.
Abstract
We construct a priori error estimation for the force error of the twin-range cutoff method, which is widely used to treat the short-range non-bonded interactions in molecular simulations. Based on the error and cost estimation, we develop a work flow that can automatically determine the nearly most efficient twin-range cutoff parameters (i.e. the cutoff radii and the neighbor list updating frequency) prior to a simulation for a predetermined accuracy. Both the error estimate and the parameter tuning method are demonstrated to be effective by testing simulations of the standard Lennard-Jones 6-12 fluid in gas, liquid as well as supercritical state. We recommend the tuned twin-range cutoff method that can save precious user time and computational resources.
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Taxonomy
TopicsProtein Structure and Dynamics · Spectroscopy and Quantum Chemical Studies · Mass Spectrometry Techniques and Applications
