On the Properties of Language Classes Defined by Bounded Reaction Automata
Fumiya Okubo, Satoshi Kobayashi, Takashi Yokomori

TL;DR
This paper explores the properties of language classes defined by bounded reaction automata, introducing new models and establishing their relationships with classical language hierarchies, revealing their computational power and closure properties.
Contribution
It introduces lambda-LRAs, analyzes their closure properties, and establishes the equivalence of ERA languages with context-sensitive languages, advancing the formal understanding of reaction automata.
Findings
Lambda-LRAs form an AFL with closure properties
Languages accepted by ERAs are exactly context-sensitive languages
Any recursively enumerable language is a homomorphic image of an LRA language
Abstract
Reaction automata are a formal model that has been introduced to investigate the computing powers of interactive behaviors of biochemical reactions([14]). Reaction automata are language acceptors with multiset rewriting mechanism whose basic frameworks are based on reaction systems introduced in [4]. In this paper we continue the investigation of reaction automata with a focus on the formal language theoretic properties of subclasses of reaction automata, called linearbounded reaction automata (LRAs) and exponentially-bounded reaction automata (ERAs). Besides LRAs, we newly introduce an extended model (denoted by lambda-LRAs) by allowing lambda-moves in the accepting process of reaction, and investigate the closure properties of language classes accepted by both LRAs and lambda-LRAs. Further, we establish new relationships of language classes accepted by LRAs and by ERAs with the…
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Taxonomy
TopicsDNA and Biological Computing · semigroups and automata theory · Chemical Synthesis and Analysis
