Dynamical Instability in Boolean Networks as a Percolation Problem
Shane Squires, Edward Ott, and Michelle Girvan

TL;DR
This paper demonstrates that the phase transition in Boolean network dynamics, relevant for gene regulation models, can be understood through a static percolation problem, predicting long-term behavior of perturbations.
Contribution
It introduces a novel mapping of Boolean network phase transitions onto a static percolation problem, providing a new analytical approach.
Findings
Percolation mapping accurately predicts phase transition points.
Long-term Hamming distance can be derived from static percolation properties.
Numerical verification confirms the theoretical predictions.
Abstract
Boolean networks, widely used to model gene regulation, exhibit a phase transition between regimes in which small perturbations either die out or grow exponentially. We show and numerically verify that this phase transition in the dynamics can be mapped onto a static percolation problem which predicts the long-time average Hamming distance between perturbed and unperturbed orbits.
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Taxonomy
TopicsGene Regulatory Network Analysis · Slime Mold and Myxomycetes Research
