On Approximability of Block Sorting
N. S. Narayanaswamy, Swapnoneel Roy

TL;DR
This paper proves that Block Sorting, a problem relevant to OCR and biology, is APX-Hard, establishing its computational difficulty and providing new bounds through a reduction from Max-3SAT and a novel parametrized problem.
Contribution
It establishes the APX-Hardness of Block Sorting via a linear reduction from Max-3SAT and introduces a new lower bound through the k-Block Merging problem.
Findings
Block Sorting is Max-SNP-Hard (APX-Hard).
A linear reduction from Max-3SAT to Block Sorting was constructed.
A new lower bound for Block Sorting was established using k-Block Merging.
Abstract
Block Sorting is a well studied problem, motivated by its applications in Optical Character Recognition (OCR), and Computational Biology. Block Sorting has been shown to be NP-Hard, and two separate polynomial time 2-approximation algorithms have been designed for the problem. But questions like whether a better approximation algorithm can be designed, and whether the problem is APX-Hard have been open for quite a while now. In this work we answer the latter question by proving Block Sorting to be Max-SNP-Hard (APX-Hard). The APX-Hardness result is based on a linear reduction of Max-3SAT to Block Sorting. We also provide a new lower bound for the problem via a new parametrized problem k-Block Merging.
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Taxonomy
TopicsGenome Rearrangement Algorithms · Algorithms and Data Compression · DNA and Biological Computing
